Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.2e-291 1005.7 510 100.0
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 2.0e-196 689.5 511 67.1
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 1.1e-191 673.7 511 66.3
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.2e-191 671.0 512 66.0
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 9.4e-191 670.6 511 65.2
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 4.7e-190 668.3 512 68.0
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 4.7e-190 668.3 511 65.2
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 4.7e-190 668.3 510 64.5
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 1.0e-189 667.2 525 63.4
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 9.7e-188 660.6 511 66.5
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 3.7e-187 658.7 549 61.9
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 1.4e-186 656.8 511 64.4
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 2.4e-186 656.0 511 66.3
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 7.0e-186 654.4 512 62.7
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 1.6e-185 653.3 511 65.4
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 5.9e-185 651.4 511 66.1
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.8e-184 648.7 511 63.6
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 3.8e-184 648.7 511 66.5
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 8.5e-184 647.5 510 61.6
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 1.5e-183 646.7 512 64.1
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 4.2e-183 645.2 511 64.0
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 7.2e-183 644.4 511 63.6
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 7.2e-183 644.4 511 64.0
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 2.7e-182 642.5 552 58.2
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 4.7e-182 641.7 511 61.1
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 1.0e-181 640.6 511 63.6
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.3e-181 639.4 511 61.6
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 3.0e-181 639.0 511 61.8
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 3.0e-181 639.0 511 61.8
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 5.7e-180 634.8 511 62.6
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 5.7e-180 634.8 511 62.0
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 7.5e-180 634.4 514 63.0
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 7.5e-180 634.4 513 64.7
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 2.8e-179 632.5 529 60.9
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 1.1e-178 630.6 553 60.8
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 1.4e-178 630.2 511 61.6
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 9.1e-178 627.5 511 63.4
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 1.2e-177 627.1 512 61.1
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 1.6e-177 626.7 522 62.1
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 1.7e-176 623.2 513 60.2
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 2.2e-176 622.9 510 60.6
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 5.0e-176 621.7 513 60.2
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 5.5e-175 618.2 510 62.0
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 1.6e-174 616.7 512 60.5
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 8.0e-174 614.4 511 60.3
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 1.8e-173 613.2 511 59.9
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 3.0e-173 612.5 514 60.9
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 3.0e-173 612.5 514 60.3
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 4.0e-173 612.1 511 60.1
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.5e-172 610.1 506 61.3
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 2.6e-172 609.4 511 61.3
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 3.4e-172 609.0 510 61.8
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 5.7e-172 608.2 542 59.2
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 7.5e-172 607.8 511 59.1
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.4e-170 602.8 508 60.4
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 3.1e-170 602.4 513 60.4
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 7.0e-170 601.3 516 57.9
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 1.2e-169 600.5 512 59.0
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 5.9e-169 598.2 511 59.9
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 7.7e-169 597.8 512 59.8
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 5.0e-168 595.1 512 57.6
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 3.2e-167 592.4 516 58.5
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 4.2e-167 592.0 514 58.8
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 3.6e-166 589.0 512 60.7
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 4.7e-166 588.6 514 58.4
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 6.1e-166 588.2 496 61.5
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 8.0e-166 587.8 514 58.6
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 1.4e-165 587.0 513 57.7
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.4e-165 587.0 521 59.5
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 4.0e-165 585.5 513 57.9
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 6.8e-165 584.7 516 58.3
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 7.5e-164 581.3 514 58.2
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.7e-163 580.1 517 57.6
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.1e-162 577.4 523 56.6
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 2.4e-162 576.2 460 65.7
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 3.1e-162 575.9 514 57.4
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 4.1e-162 575.5 424 68.9
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 7.0e-162 574.7 486 59.1
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 5.9e-161 571.6 515 56.1
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 1.7e-160 570.1 510 56.5
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 1.7e-160 570.1 510 56.5
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 6.6e-160 568.2 498 58.4
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 2.1e-158 563.1 510 55.7
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 6.1e-158 561.6 461 64.4
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 1.0e-157 560.8 583 51.5
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 9.8e-156 554.3 438 66.9
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 3.2e-154 549.3 510 55.9
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 4.6e-153 545.4 515 55.7
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 2.1e-150 536.6 590 51.2
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 4.4e-148 528.9 451 60.1
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 9.2e-146 521.2 531 52.7
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 9.5e-143 511.1 532 51.5
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 1.6e-142 510.4 513 51.3
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.6e-137 493.8 510 51.4
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 4.3e-135 485.7 461 58.4
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 5.2e-125 452.2 461 49.9
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 6.9e-125 451.8 520 46.0
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 4.9e-123 445.7 340 67.4
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 9.3e-122 441.4 376 60.4
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 5.3e-117 425.6 385 56.9
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 2.1e-113 413.7 515 43.9
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 1.0e-96 358.2 516 39.9
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 1.5e-95 354.4 325 57.2
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 4.3e-95 352.8 440 48.9
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.3e-94 351.3 366 54.6
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 1.7e-86 324.3 388 45.4
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 1.7e-83 314.3 241 66.8
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 3.8e-83 313.2 457 41.8
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 2.2e-78 297.4 340 47.6
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 1.4e-72 278.1 323 48.9
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 8.8e-72 275.4 427 43.1
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 2.2e-70 270.8 196 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 5.0e-67 259.6 452 37.2
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 9.7e-63 245.4 182 66.5
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 1.1e-58 231.9 386 38.9
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 7.0e-53 212.6 534 31.6
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 9.1e-53 212.2 359 38.2
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 8.9e-48 195.7 135 69.6
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 5.0e-43 179.9 136 65.4
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.0e-37 159.5 127 63.0
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.0e-37 159.5 127 63.0
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 8.0e-33 146.0 191 42.9
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 4.0e-32 143.7 504 29.4
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 7.5e-23 112.8 60 83.3
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 1.9e-21 108.2 121 47.9
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 1.0e-19 102.4 223 35.0
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.5e-18 98.6 53 79.2
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 3.3e-18 97.4 65 66.2
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 4.3e-18 97.1 106 47.2
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 4.3e-18 97.1 106 47.2
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 7.3e-18 96.3 75 58.7
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-16 91.3 65 70.8
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 7.6e-15 86.3 65 61.5
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 4.4e-07 60.5 76 38.2


User provided reference genes

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