Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.7e-61 239.2 123 100.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.5e-35 151.8 120 69.2
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 7.9e-35 150.6 122 68.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 5.1e-34 147.9 118 66.9
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 8.7e-34 147.1 122 67.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.5e-33 146.4 123 63.4
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 4.3e-33 144.8 124 65.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.4e-33 144.1 120 65.8
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.8e-32 142.1 123 63.4
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 2.8e-32 142.1 118 67.8
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.7e-32 141.7 123 67.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 3.7e-32 141.7 121 62.8
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 3.7e-32 141.7 123 63.4
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 4.8e-32 141.4 122 63.1
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.8e-32 141.4 123 64.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.4e-31 139.8 118 63.6
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.4e-31 139.8 121 64.5
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.4e-31 139.8 124 66.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.4e-31 139.8 120 62.5
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.4e-31 139.8 118 63.6
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.4e-31 139.0 124 63.7
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.0e-31 138.3 124 66.1
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 5.3e-31 137.9 121 62.8
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 5.3e-31 137.9 123 62.6
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.9e-31 137.5 118 63.6
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 9.0e-31 137.1 118 61.0
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 9.0e-31 137.1 123 58.5
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.0e-31 137.1 126 60.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 9.0e-31 137.1 122 59.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 9.0e-31 137.1 118 63.6
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.2e-30 136.7 118 62.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.2e-30 136.7 123 60.2
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.2e-30 136.7 120 63.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.5e-30 134.8 123 64.2
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 4.5e-30 134.8 123 61.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 5.8e-30 134.4 123 63.4
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 7.6e-30 134.0 123 62.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.6e-30 134.0 122 62.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.6e-30 134.0 120 60.0
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.0e-29 133.7 122 61.5
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.0e-29 133.7 122 61.5
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.3e-29 133.3 123 59.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-29 133.3 126 60.3
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.3e-29 133.3 122 58.2
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.3e-29 133.3 122 58.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.7e-29 132.9 123 62.6
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.7e-29 132.9 92 71.7
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.7e-29 132.9 92 71.7
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.7e-29 132.9 123 64.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.2e-29 132.5 110 58.2
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.9e-29 132.1 120 60.8
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.9e-29 132.1 124 58.9
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.9e-29 132.1 124 59.7
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 3.8e-29 131.7 120 60.0
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.9e-29 131.3 124 58.9
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 4.9e-29 131.3 124 58.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 6.5e-29 131.0 80 78.8
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 8.4e-29 130.6 124 59.7
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 8.4e-29 130.6 117 62.4
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.1e-28 130.2 124 60.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.5e-28 129.0 123 58.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 2.5e-28 129.0 115 60.9
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 3.2e-28 128.6 118 62.7
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 4.2e-28 128.3 86 72.1
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.2e-28 128.3 124 58.1
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 4.2e-28 128.3 118 61.9
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 4.2e-28 128.3 84 72.6
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 5.5e-28 127.9 126 60.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 5.5e-28 127.9 118 58.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.1e-28 127.5 123 59.3
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.1e-28 127.5 82 74.4
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 9.3e-28 127.1 123 60.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 9.3e-28 127.1 123 60.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 9.3e-28 127.1 123 60.2
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.2e-27 126.7 123 56.9
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.6e-27 126.3 123 59.3
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.6e-27 126.3 74 81.1
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.1e-27 125.9 125 57.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.1e-27 125.9 123 56.9
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 4.6e-27 124.8 123 56.9
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.6e-27 124.8 123 58.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 4.6e-27 124.8 123 59.3
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 4.6e-27 124.8 123 56.9
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 4.6e-27 124.8 120 57.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 6.0e-27 124.4 123 57.7
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 6.0e-27 124.4 123 56.1
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 6.0e-27 124.4 123 56.1
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.9e-27 124.0 127 58.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.0e-26 123.6 123 56.1
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.3e-26 123.2 73 83.6
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.3e-26 123.2 75 77.3
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 118 56.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.8e-26 122.9 131 54.2
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.3e-26 122.5 122 58.2
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.0e-26 122.1 120 58.3
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 3.0e-26 122.1 123 57.7
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 3.9e-26 121.7 123 58.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.9e-26 121.7 101 67.3
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.9e-26 121.7 120 57.5
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.1e-26 121.3 123 56.9
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.1e-26 121.3 123 56.9
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.1e-26 121.3 123 56.9
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 5.1e-26 121.3 123 57.7
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 5.1e-26 121.3 129 54.3
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.1e-25 120.2 78 74.4
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.5e-25 119.8 118 57.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.5e-25 119.8 94 60.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.9e-25 119.4 123 56.1
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.9e-25 119.4 124 56.5
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.3e-25 118.6 123 54.5
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.7e-25 117.9 139 51.1
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 5.7e-25 117.9 123 57.7
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.7e-25 117.9 123 56.9
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.1e-23 113.6 101 60.4
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.4e-23 113.2 155 47.7
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.4e-23 112.5 108 54.6
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 7.6e-22 107.5 102 59.8
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.7e-21 106.3 64 79.7
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.2e-21 105.9 82 62.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.8e-21 105.1 88 64.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.4e-20 103.2 87 58.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.2e-20 102.1 81 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 7.2e-20 100.9 75 64.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.4e-18 96.7 71 64.8
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.3e-18 95.9 59 76.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.3e-17 91.7 100 54.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 4.3e-17 91.7 107 49.5
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.7e-16 88.6 67 65.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 6.3e-16 87.8 54 75.9
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 8.2e-16 87.4 57 71.9
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.1e-15 85.5 85 50.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.1e-15 85.1 94 48.9
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 4.1e-15 85.1 110 49.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 6.9e-15 84.3 94 51.1
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.2e-12 75.1 132 38.6
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.6e-11 73.2 47 70.2
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 2.8e-08 62.4 83 37.3
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 3.1e-07 58.9 73 43.8


User provided reference genes

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