Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 4.5e-126 454.5 215 100.0
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 88.4
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.4e-111 406.4 216 89.8
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.4e-111 406.4 215 88.4
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 3.4e-110 401.7 215 87.9
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 4.5e-110 401.4 215 87.0
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 5.9e-110 401.0 215 86.5
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.2e-109 399.1 215 86.5
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 87.4
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 86.5
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 3.8e-109 398.3 214 86.9
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 3.8e-109 398.3 214 86.9
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 3.8e-109 398.3 215 86.5
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 8.4e-109 397.1 216 88.4
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.1e-108 396.7 215 86.5
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.1e-108 396.7 215 86.0
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.1e-108 396.7 215 86.5
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 1.1e-108 396.7 216 86.6
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.5e-108 395.6 219 85.4
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 3.2e-108 395.2 215 86.0
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 86.1
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 86.1
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 4.2e-108 394.8 215 85.6
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 5.5e-108 394.4 215 86.5
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 7.2e-108 394.0 215 86.0
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 9.3e-108 393.7 215 85.6
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.6e-107 392.9 216 86.6
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.6e-107 392.9 215 85.6
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.6e-107 392.9 213 85.4
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.7e-107 392.1 215 85.6
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.5e-107 391.7 215 83.7
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 4.6e-107 391.3 219 85.4
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 87.0
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 6.1e-107 391.0 216 87.0
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.0e-106 390.2 215 85.6
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 1.8e-106 389.4 237 79.3
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 2.3e-106 389.0 216 86.6
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 3.0e-106 388.7 215 83.7
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.9e-106 388.3 215 84.7
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 84.3
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 6.7e-106 387.5 215 84.2
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 2.5e-105 385.6 217 83.4
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 4.3e-105 384.8 217 82.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 4.3e-105 384.8 215 84.2
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 7.4e-105 384.0 231 80.1
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.6e-104 382.9 216 83.8
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.6e-104 382.9 218 83.0
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 3.7e-104 381.7 216 84.3
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 3.7e-104 381.7 217 82.0
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 6.3e-104 380.9 216 83.8
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 81.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 81.9
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.4e-103 379.8 216 81.5
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 81.5
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 81.5
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 81.0
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.4e-103 379.0 198 88.4
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.4e-103 379.0 217 82.0
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 4.1e-103 378.3 215 83.7
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 5.3e-103 377.9 215 82.3
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 6.9e-103 377.5 216 81.5
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 9.0e-103 377.1 216 82.9
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.2e-102 376.7 216 82.9
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.2e-102 376.7 217 81.6
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.5e-102 376.3 216 80.6
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 1.5e-102 376.3 225 80.0
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.6e-102 375.6 215 80.9
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 82.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 4.5e-102 374.8 217 81.1
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 4.5e-102 374.8 210 81.9
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 80.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 7.7e-102 374.0 215 82.8
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.0e-101 373.6 186 92.5
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.4e-100 369.8 216 79.6
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.4e-100 369.8 198 85.9
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 7.2e-100 367.5 196 86.7
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.7e-99 365.5 220 80.5
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 5.1e-98 361.3 215 81.4
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 6.7e-98 360.9 217 79.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 8.8e-98 360.5 219 75.8
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.5e-97 359.8 190 89.5
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 4.3e-97 358.2 211 78.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.7e-96 356.3 186 87.6
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 4.8e-96 354.8 214 77.1
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.3e-96 354.4 201 81.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 8.2e-96 354.0 219 74.0
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.1e-95 353.6 190 86.8
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.4e-95 353.2 241 72.6
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.8e-95 352.8 196 84.7
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.8e-95 352.8 198 83.8
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.4e-95 352.4 203 80.3
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.3e-95 351.3 200 80.5
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 1.2e-94 350.1 188 85.6
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 5.9e-94 347.8 180 87.8
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 5.9e-94 347.8 188 84.0
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.2e-93 345.9 177 88.7
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.8e-90 336.3 189 83.6
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 3.9e-90 335.1 207 75.8
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 2.4e-87 325.9 192 77.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 5.3e-87 324.7 196 73.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 2.5e-84 315.8 196 70.9
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 4.7e-83 311.6 215 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 6.3e-80 301.2 196 68.4
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.5e-73 280.0 172 77.3
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.5e-73 280.0 172 77.3
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 4.4e-73 278.5 199 63.8
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 5.7e-73 278.1 145 86.9
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.4e-71 273.5 145 84.1
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 5.5e-68 261.5 133 88.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 8.8e-66 254.2 133 87.2
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 2.8e-64 249.2 133 84.2
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 9.5e-60 234.2 130 81.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.3e-58 229.6 122 83.6
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 8.3e-56 221.1 158 67.7
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.4e-55 219.5 124 83.1
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.0e-45 187.6 106 84.0
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-40 170.2 89 88.8
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.7e-40 170.2 93 86.0
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.6e-33 146.4 86 79.1
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 4.6e-30 135.6 82 79.3
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.2e-27 127.5 208 34.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.2e-22 110.9 231 32.5
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-15 87.4 64 67.2
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 5.4e-15 85.5 41 92.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.6e-12 75.5 64 60.9
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.2e-09 67.8 42 66.7


User provided reference genes

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