Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 1.2e-146 523.1 255 100.0
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 3.8e-140 501.5 248 98.4
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 3.7e-103 378.6 258 70.9
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 6.3e-103 377.9 249 72.7
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 1.4e-102 376.7 256 70.7
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 2.4e-102 375.9 248 72.6
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 7.0e-102 374.4 251 70.9
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 3.5e-101 372.1 258 69.8
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.3e-100 370.2 254 69.3
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 1.7e-100 369.8 255 69.4
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 2.2e-100 369.4 255 67.5
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 2.9e-100 369.0 258 69.8
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.9e-100 369.0 255 70.2
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 5.0e-100 368.2 252 69.8
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 6.5e-100 367.9 256 69.9
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 1.1e-99 367.1 251 68.9
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 1.5e-99 366.7 251 70.1
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 2.5e-99 365.9 254 68.9
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 3.2e-99 365.5 255 68.2
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 3.2e-99 365.5 254 69.3
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 4.2e-99 365.2 250 68.4
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 5.5e-99 364.8 250 70.4
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 9.4e-99 364.0 230 74.8
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 9.4e-99 364.0 252 68.7
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 2.7e-98 362.5 250 71.2
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 3.6e-98 362.1 243 70.4
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 4.7e-98 361.7 255 68.2
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 6.1e-98 361.3 220 76.8
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 6.1e-98 361.3 250 70.8
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 8.0e-98 360.9 251 69.7
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.4e-97 360.1 250 70.0
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 1.4e-97 360.1 257 67.7
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 1.8e-97 359.8 255 67.1
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 2.3e-97 359.4 251 69.3
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.3e-97 359.4 255 67.5
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.0e-97 359.0 249 67.5
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 5.2e-97 358.2 220 77.7
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 5.2e-97 358.2 233 73.0
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 5.2e-97 358.2 254 68.9
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 6.7e-97 357.8 252 68.7
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.1e-96 357.1 252 68.7
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.1e-96 357.1 252 68.3
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.5e-96 356.7 252 68.3
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.5e-96 356.7 255 67.5
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.5e-96 356.7 222 75.7
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 2.0e-96 356.3 262 66.8
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 2.6e-96 355.9 260 66.2
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 3.3e-96 355.5 253 69.2
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 3.3e-96 355.5 251 67.7
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 5.7e-96 354.8 250 67.6
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 5.7e-96 354.8 255 66.7
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 7.4e-96 354.4 251 66.1
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 9.7e-96 354.0 233 72.1
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 1.7e-95 353.2 251 69.7
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.8e-94 349.7 260 65.4
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.1e-94 349.0 257 66.5
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 4.1e-94 348.6 228 71.9
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 4.1e-94 348.6 257 66.5
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 4.1e-94 348.6 219 76.7
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 5.3e-94 348.2 250 67.2
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 1.6e-93 346.7 265 66.4
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 2.0e-93 346.3 258 66.3
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 2.0e-93 346.3 222 73.4
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.6e-93 345.9 257 66.1
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 2.6e-93 345.9 250 66.4
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 3.5e-93 345.5 255 65.1
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 4.5e-93 345.1 253 66.0
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.7e-92 343.2 257 65.4
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.2e-92 342.8 250 65.6
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.2e-92 342.8 257 66.1
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.2e-92 342.8 254 65.7
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 2.2e-92 342.8 256 64.8
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.9e-92 342.4 223 70.4
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 5.0e-92 341.7 255 64.7
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 5.0e-92 341.7 224 70.1
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.9e-91 339.7 219 72.1
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 1.9e-91 339.7 265 65.3
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 5.5e-91 338.2 256 63.7
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 9.4e-91 337.4 253 63.6
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.2e-90 337.0 245 65.7
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.1e-90 336.3 256 65.6
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 4.7e-90 335.1 234 70.9
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 2.3e-89 332.8 214 74.8
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.0e-89 332.4 256 64.8
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 6.3e-87 324.7 242 65.3
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.1e-86 323.9 242 64.9
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 2.0e-85 319.7 214 71.5
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 2.0e-85 319.7 242 65.7
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 3.5e-85 318.9 218 68.8
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 1.0e-84 317.4 242 64.0
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 2.9e-84 315.8 213 68.1
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 3.8e-84 315.5 242 63.2
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 6.5e-84 314.7 242 63.6
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 6.5e-84 314.7 242 63.6
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 6.5e-84 314.7 242 63.6
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 8.5e-84 314.3 213 67.1
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 2.5e-83 312.8 252 59.1
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 3.2e-83 312.4 242 63.6
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 5.5e-83 311.6 242 63.2
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 9.4e-83 310.8 242 62.8
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 2.1e-82 309.7 239 63.6
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.8e-81 306.6 226 65.5
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 6.8e-81 304.7 255 59.2
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 8.8e-81 304.3 238 62.2
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 8.8e-81 304.3 239 62.3
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 8.8e-81 304.3 238 62.2
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 1.3e-79 300.4 241 60.2
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 1.7e-79 300.1 209 69.4
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 1.8e-78 296.6 244 58.6
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 2.0e-77 293.1 245 59.2
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 4.5e-77 292.0 243 59.7
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 4.5e-77 292.0 241 58.5
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 2.8e-74 282.7 183 72.1
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 8.9e-73 277.7 256 57.8
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 1.2e-72 277.3 217 60.8
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 4.9e-71 271.9 208 61.1
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.4e-70 269.6 211 61.1
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 9.2e-70 267.7 218 60.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.6e-61 240.4 185 61.6
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 9.8e-56 221.1 161 67.1
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 1.3e-47 194.1 162 60.5
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.1e-45 186.8 138 66.7
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 1.3e-44 184.1 214 45.3
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 1.9e-43 180.3 144 59.7
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.7e-36 157.1 114 67.5
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 6.9e-33 145.2 193 44.0
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 3.2e-30 136.3 170 43.5
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 1.1e-25 121.3 98 58.2
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.0e-12 78.2 50 72.0
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 3.3e-11 73.2 44 72.7
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 3.2e-06 56.6 39 64.1


User provided reference genes

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