Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 3.7e-166 588.2 311 100.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.6e-100 370.2 309 62.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 2.7e-100 369.4 305 64.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 6.1e-100 368.2 309 61.8
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.0e-99 367.5 311 65.6
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.0e-99 367.5 308 61.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 6.7e-99 364.8 315 62.9
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 6.7e-99 364.8 315 62.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.5e-98 363.6 309 62.5
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.3e-97 360.5 310 62.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.5e-95 353.6 314 59.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.0e-95 353.2 328 59.1
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 3.8e-94 349.0 311 63.3
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 6.5e-94 348.2 309 60.5
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 7.2e-93 344.7 307 60.9
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.2e-93 344.7 308 60.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 7.2e-93 344.7 308 60.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 7.2e-93 344.7 310 60.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.4e-93 344.4 308 60.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 6.1e-92 341.7 309 58.9
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 5.2e-91 338.6 333 58.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 8.8e-91 337.8 310 58.7
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.5e-90 337.0 333 58.0
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.3e-90 335.9 317 58.7
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 5.3e-88 328.6 321 57.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 7.0e-88 328.2 318 56.9
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 9.1e-88 327.8 309 57.9
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.2e-87 327.4 312 57.4
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.6e-87 327.0 312 58.3
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.0e-87 326.6 306 57.2
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 3.5e-87 325.9 318 56.6
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 4.5e-87 325.5 324 58.0
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.9e-87 325.1 310 60.6
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.7e-86 323.6 310 60.3
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.9e-86 322.8 317 57.1
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 5.0e-86 322.0 310 55.8
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 5.0e-86 322.0 313 60.4
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 5.0e-86 322.0 306 58.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 6.5e-86 321.6 314 58.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 8.5e-86 321.2 319 56.7
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 3.2e-85 319.3 307 57.0
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.5e-85 318.5 311 58.8
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 7.2e-85 318.2 313 57.2
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 9.4e-85 317.8 308 55.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-84 317.4 310 59.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.1e-84 316.6 314 56.7
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.7e-84 316.2 307 57.7
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.6e-84 315.8 303 55.4
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 3.6e-84 315.8 304 57.6
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 4.7e-84 315.5 315 55.9
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.3e-83 313.2 309 56.0
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 4.0e-83 312.4 309 54.0
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.2e-82 310.8 308 54.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.3e-81 307.4 311 55.9
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.2e-81 306.6 307 56.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.8e-81 306.2 316 53.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.1e-80 304.3 306 54.2
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.4e-80 303.9 309 54.4
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.1e-80 302.8 322 57.1
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 5.3e-80 302.0 306 53.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.6e-79 300.4 310 54.8
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.7e-79 299.7 308 56.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.5e-79 298.9 312 53.5
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.9e-79 298.5 322 54.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.0e-78 297.7 320 55.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-78 297.4 313 55.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.8e-78 295.8 313 55.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 6.5e-78 295.0 322 53.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.9e-77 293.5 309 55.7
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 4.2e-77 292.4 310 55.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 5.5e-77 292.0 311 52.4
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-76 290.8 302 52.6
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 3.6e-76 289.3 312 51.9
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 3.6e-76 289.3 311 59.5
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 8.0e-76 288.1 302 53.3
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.4e-75 287.3 317 53.9
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.5e-74 283.9 257 61.1
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.5e-74 283.9 310 52.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.7e-74 282.0 313 53.0
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.4e-72 277.3 303 53.1
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.4e-72 276.6 305 55.1
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.2e-71 274.2 398 44.2
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.0e-70 271.2 317 51.4
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 8.6e-70 268.1 289 55.7
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 8.6e-70 268.1 313 51.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-66 257.7 328 54.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.2e-66 257.7 320 48.4
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 2.6e-66 256.5 315 53.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 4.4e-66 255.8 328 53.7
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.3e-65 254.2 304 49.7
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-65 253.8 328 53.7
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 2.8e-65 253.1 311 49.2
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 4.9e-65 252.3 238 57.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 8.3e-65 251.5 328 53.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 8.3e-65 251.5 328 53.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-63 247.7 306 51.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-63 247.7 307 49.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.6e-63 247.3 255 56.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 5.9e-63 245.4 320 51.2
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.0e-62 244.6 339 46.6
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.9e-62 243.0 339 45.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 6.6e-62 241.9 314 47.8
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.6e-61 238.8 344 44.8
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.1e-60 236.9 318 50.6
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.0e-59 234.6 311 46.6
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 6.8e-59 231.9 289 49.1
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.5e-58 230.7 311 46.6
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.2e-57 226.9 340 44.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 2.2e-57 226.9 315 43.8
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 8.3e-57 224.9 193 60.1
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 4.1e-56 222.6 305 43.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.0e-54 218.0 266 49.2
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 4.3e-53 212.6 311 46.0
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.9e-45 187.2 305 44.9
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 9.5e-45 184.9 318 44.0
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-43 181.4 143 62.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.5e-42 177.6 291 45.7
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.7e-41 174.1 361 38.2
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.7e-39 166.8 188 52.1
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.7e-39 166.8 235 47.2
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.0e-39 165.6 306 37.6
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 7.8e-39 165.2 188 53.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 7.8e-39 165.2 256 46.9
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.1e-37 161.4 163 57.7
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.6e-36 157.5 187 52.4
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 8.1e-36 155.2 114 66.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 3.1e-35 153.3 142 56.3
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 5.8e-34 149.1 112 64.3
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-33 147.1 114 63.2
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 3.2e-32 143.3 183 47.0
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 2.1e-31 140.6 157 47.8
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-30 138.3 102 66.7
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 3.9e-30 136.3 156 47.4
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 5.1e-30 136.0 106 68.9
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.5e-29 134.4 186 46.2
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 2.1e-28 130.6 290 40.3
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.1e-28 130.6 97 68.0
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.6e-28 129.8 146 49.3
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 6.2e-28 129.0 290 40.0
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 8.1e-28 128.6 290 40.0
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.3e-27 125.9 169 46.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 5.3e-27 125.9 169 46.2
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 5.8e-26 122.5 101 67.3
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 7.6e-26 122.1 293 35.8
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 3.3e-21 106.7 130 47.7
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.0e-18 97.4 257 34.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.0e-18 97.4 78 65.4
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 7.1e-16 89.0 102 52.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.1e-14 82.8 134 44.0
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.8e-12 76.3 52 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 3.1e-11 73.6 190 34.7
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 5.3e-11 72.8 55 63.6
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.5e-10 71.2 71 54.9
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 5.8e-10 69.3 57 57.9
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-06 58.2 38 73.7
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.0e-06 57.0 55 58.2
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 3.9e-06 56.6 381 31.0


User provided reference genes

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