Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.9e-47 191.4 89 100.0
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.0e-16 89.0 79 55.7
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.7e-16 88.6 87 51.7
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.5e-16 87.8 78 53.8
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.9e-16 87.4 78 53.8
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.9e-16 87.4 78 53.8
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 7.7e-16 87.0 78 50.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.7e-15 85.9 80 56.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.3e-15 85.5 59 62.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.0e-15 84.3 80 52.5
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.1e-14 83.2 54 68.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-14 82.4 86 50.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 2.5e-14 82.0 76 51.3
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.5e-14 82.0 86 45.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.5e-14 80.9 80 52.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.2e-14 80.5 75 53.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.2e-14 80.5 75 52.0
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.2e-14 80.5 82 50.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.2e-13 79.7 90 47.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-13 79.3 90 47.8
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.6e-13 79.3 75 52.0
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.1e-13 79.0 90 48.9
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.1e-13 79.0 81 49.4
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.1e-13 79.0 81 49.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.1e-13 79.0 88 52.3
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 2.8e-13 78.6 81 48.1
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.8e-13 78.6 86 38.4
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.8e-13 78.6 77 53.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-13 78.2 62 59.7
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-13 78.2 62 59.7
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.6e-13 78.2 56 60.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 6.1e-13 77.4 78 51.3
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.1e-13 77.4 75 50.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 6.1e-13 77.4 76 48.7
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 6.1e-13 77.4 82 47.6
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 8.0e-13 77.0 95 43.2
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 8.0e-13 77.0 75 50.7
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 8.0e-13 77.0 81 49.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.0e-12 76.6 75 49.3
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-12 76.6 56 57.1
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-12 75.9 81 54.3
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.8e-12 75.9 81 54.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.8e-12 75.9 56 60.7
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.3e-12 75.5 83 45.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.0e-12 75.1 83 49.4
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 5.2e-12 74.3 86 40.7
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 5.2e-12 74.3 49 65.3
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 8.9e-12 73.6 76 52.6
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 8.9e-12 73.6 83 47.0
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-11 72.8 81 51.9
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.0e-11 72.4 53 60.4
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.0e-11 72.4 53 60.4
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.0e-11 72.4 84 45.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.0e-11 72.4 76 47.4
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.0e-11 72.4 77 46.8
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 2.0e-11 72.4 81 49.4
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.4e-11 71.2 52 57.7
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.4e-11 71.2 52 57.7
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.4e-11 71.2 77 48.1
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 9.8e-11 70.1 87 44.8
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-10 69.3 88 45.5
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.7e-10 69.3 45 62.2
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.2e-10 68.9 79 41.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.8e-10 68.6 87 44.8
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.7e-10 68.2 63 46.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.9e-10 67.8 45 64.4
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 4.9e-10 67.8 76 47.4
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.9e-10 67.8 79 40.5
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 4.9e-10 67.8 78 41.0
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 6.3e-10 67.4 86 44.2
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.3e-10 67.4 73 43.8
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 8.3e-10 67.0 84 42.9
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-09 66.6 82 42.7
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-09 65.5 77 44.2
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 3.1e-09 65.1 55 56.4
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 4.1e-09 64.7 76 40.8
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 7.0e-09 63.9 92 46.7
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 7.0e-09 63.9 80 42.5
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 7.0e-09 63.9 86 44.2
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.0e-08 62.4 78 44.9
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.7e-08 62.0 60 48.3
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 3.5e-08 61.6 78 44.9
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.5e-08 61.6 41 61.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.5e-08 61.2 78 42.3
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 5.9e-08 60.8 47 59.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 7.8e-08 60.5 81 39.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.3e-07 59.7 54 57.4
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.3e-07 58.9 47 57.4
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.9e-07 58.5 44 50.0
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 6.6e-07 57.4 58 50.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 8.6e-07 57.0 85 40.0
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.5e-06 56.2 45 53.3
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.5e-06 55.5 76 39.5
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.3e-06 55.1 60 48.3
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.3e-06 54.7 42 54.8
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.3e-06 54.7 79 39.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 7.3e-06 53.9 76 38.2
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 7.3e-06 53.9 43 53.5
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 9.5e-06 53.5 42 52.4
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 9.5e-06 53.5 41 56.1


User provided reference genes

Program Settings