Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.9e-43 178.7 85 100.0
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 9.0e-38 159.8 85 88.2
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 5.8e-37 157.1 85 88.2
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 5.8e-37 157.1 85 85.9
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 9.9e-37 156.4 85 85.9
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.4e-35 152.5 83 84.3
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 2.4e-35 151.8 85 83.5
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 5.4e-35 150.6 85 82.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 5.4e-35 150.6 80 86.2
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.4e-35 150.6 80 86.2
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 9.3e-35 149.8 85 80.0
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 9.3e-35 149.8 85 83.5
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.2e-34 149.4 85 81.2
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.2e-34 149.4 84 84.5
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.2e-34 149.4 85 81.2
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-34 149.1 85 81.2
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.6e-34 147.5 84 83.3
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 4.6e-34 147.5 84 83.3
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 4.6e-34 147.5 84 83.3
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 7.9e-34 146.7 84 83.3
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 7.9e-34 146.7 85 81.2
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.0e-33 146.4 85 77.6
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.0e-33 146.4 85 80.0
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 81.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-33 145.6 78 85.9
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.0e-33 144.8 86 79.1
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.7e-33 143.7 84 77.4
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 6.7e-33 143.7 82 81.7
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.1e-32 142.9 84 79.8
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.5e-32 142.5 94 73.4
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 3.3e-32 141.4 89 75.3
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 3.3e-32 141.4 89 75.3
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 4.3e-32 141.0 94 72.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 7.4e-32 140.2 76 81.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.3e-31 139.4 79 81.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.1e-31 138.7 78 83.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 2.1e-31 138.7 78 84.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.1e-31 138.7 79 81.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.8e-31 138.3 78 80.8
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 78 84.6
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 6.2e-31 137.1 78 82.1
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.2e-31 137.1 78 82.1
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.2e-31 137.1 76 84.2
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.2e-31 137.1 76 84.2
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 8.1e-31 136.7 78 83.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 8.1e-31 136.7 78 83.3
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 8.1e-31 136.7 85 76.5
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-30 136.0 69 89.9
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.4e-30 136.0 83 72.3
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.4e-30 135.2 84 69.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.1e-30 134.8 70 84.3
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.2e-29 132.9 84 76.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.0e-29 132.1 73 84.9
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 71.8
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 69.4
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 7.6e-29 130.2 83 69.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 7.6e-29 130.2 83 69.9
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 7.6e-29 130.2 83 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 9.9e-29 129.8 79 70.9
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 9.9e-29 129.8 84 73.8
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 71.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 83 69.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 83 69.9
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.3e-28 129.4 85 72.9
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 85 71.8
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.3e-28 129.4 85 71.8
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.7e-28 129.0 85 69.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.7e-28 129.0 85 74.1
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.7e-28 129.0 83 72.3
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.2e-28 128.6 84 72.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.2e-28 128.6 83 71.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.8e-28 127.9 83 68.7
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 3.8e-28 127.9 68 83.8
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 4.9e-28 127.5 84 73.8
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.9e-28 127.5 87 71.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 8.4e-28 126.7 83 69.9
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 8.4e-28 126.7 68 86.8
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.1e-27 126.3 83 73.5
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-27 125.9 86 70.9
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.4e-27 125.9 86 69.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.4e-27 125.9 86 70.9
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.9e-27 125.6 81 74.1
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.4e-27 125.2 85 71.8
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 2.4e-27 125.2 82 72.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 2.4e-27 125.2 82 72.0
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 2.4e-27 125.2 84 71.4
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 3.2e-27 124.8 82 72.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.2e-27 124.8 84 69.0
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 4.2e-27 124.4 86 70.9
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 5.5e-27 124.0 86 69.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 5.5e-27 124.0 88 68.2
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 5.5e-27 124.0 68 80.9
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 5.5e-27 124.0 72 73.6
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 5.5e-27 124.0 84 69.0
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 7.1e-27 123.6 84 71.4
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 7.1e-27 123.6 68 83.8
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 7.1e-27 123.6 97 66.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.2e-26 122.9 74 75.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.6e-26 122.5 85 71.8
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 2.1e-26 122.1 84 70.2
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.1e-26 122.1 68 86.8
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.5e-26 121.3 70 81.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.5e-26 121.3 70 81.4
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.5e-26 121.3 79 70.9
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.5e-26 121.3 85 70.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.5e-26 121.3 82 70.7
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.5e-26 121.3 70 81.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 4.6e-26 120.9 84 69.0
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 6.0e-26 120.6 87 63.2
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 7.9e-26 120.2 86 67.4
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.0e-25 119.8 95 64.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 3.9e-25 117.9 76 73.7
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.9e-25 117.9 62 85.5
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 3.9e-25 117.9 63 82.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 6.7e-25 117.1 98 62.2
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 6.7e-25 117.1 87 60.9
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 8.7e-25 116.7 83 63.9
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.1e-24 116.3 73 68.5
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 62.8
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.3e-24 114.8 85 68.2
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 3.3e-24 114.8 75 70.7
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 7.4e-24 113.6 76 64.5
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.3e-23 112.8 84 64.3
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-23 112.5 55 89.1
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.1e-23 112.1 86 62.8
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 4.8e-23 110.9 115 53.0
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.1e-22 109.8 79 70.9
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.1e-22 108.2 68 75.0
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 5.3e-22 107.5 87 62.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.2e-21 106.3 87 63.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.2e-21 106.3 67 76.1
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.2e-21 106.3 72 63.9
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.0e-21 105.5 87 60.9
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.4e-21 104.8 71 60.6
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.7e-20 102.4 71 57.7
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.7e-20 102.4 52 86.5
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.2e-20 102.1 56 82.1
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 2.2e-20 102.1 71 64.8
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.5e-20 100.5 83 60.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 8.4e-20 100.1 54 75.9
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.1e-19 99.8 53 79.2
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.9e-19 99.0 52 80.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 3.2e-19 98.2 98 53.1
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.6e-18 95.9 52 84.6
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.8e-17 92.4 93 51.6
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 3.0e-17 91.7 84 56.0
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.9e-17 91.3 101 50.5
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 8.7e-17 90.1 54 72.2
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.9e-16 89.0 68 64.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.2e-15 85.5 64 54.7
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 3.7e-15 84.7 72 59.7
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 5.9e-13 77.4 59 62.7
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.9e-12 75.1 47 74.5
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 2.9e-12 75.1 63 52.4
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.2e-10 69.7 46 67.4
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 7.9e-10 67.0 53 62.3
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 8.8e-09 63.5 60 41.7
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 2.5e-08 62.0 62 43.5
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.3e-07 57.4 114 37.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.1e-06 56.6 49 46.9


User provided reference genes

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