Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 2.2e-293 1011.5 499 100.0
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.8e-186 656.4 502 66.7
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 4.9e-184 648.3 503 66.8
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 5.4e-175 618.2 502 63.3
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.0e-169 599.7 507 61.1
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 4.6e-166 588.6 505 63.0
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.3e-165 587.0 505 63.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 8.7e-165 584.3 504 62.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.6e-163 578.9 508 63.0
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 1.2e-158 563.9 505 62.0
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 3.6e-155 552.4 507 60.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.8e-154 550.1 507 60.4
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 3.4e-153 545.8 506 60.3
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 4.9e-152 542.0 506 58.9
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-151 540.8 508 59.3
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.5e-148 530.4 509 59.5
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 7.4e-148 528.1 511 58.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.3e-147 527.3 489 59.3
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.1e-146 524.2 504 57.5
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.4e-146 523.9 526 57.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 6.9e-146 521.5 507 58.0
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 6.9e-146 521.5 515 57.5
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.6e-145 519.6 506 57.3
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.6e-145 519.6 508 58.5
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 3.4e-145 519.2 506 56.1
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.1e-143 514.2 506 56.9
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.9e-143 513.5 507 56.4
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 3.0e-141 506.1 507 56.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.1e-140 504.2 521 56.8
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.5e-140 503.8 506 56.9
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.3e-140 502.7 504 54.8
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 3.7e-139 499.2 504 56.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 3.7e-139 499.2 479 56.2
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.5e-137 493.8 488 56.8
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.0e-137 493.4 486 56.6
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.0e-137 493.4 506 56.1
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.0e-137 493.4 488 57.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 5.8e-137 491.9 487 56.9
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.8e-137 491.9 487 56.9
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.8e-137 491.9 487 56.9
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.9e-136 489.6 487 56.7
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.5e-135 486.5 487 56.7
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.1e-132 477.6 472 57.0
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.6e-131 473.8 503 53.3
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.2e-131 473.4 510 53.9
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 2.2e-131 473.4 519 53.9
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 6.3e-131 471.9 505 54.3
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 6.9e-130 468.4 447 57.3
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 6.5e-128 461.8 510 52.5
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 6.5e-128 461.8 496 53.8
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 2.1e-126 456.8 531 54.8
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 7.4e-124 448.4 610 46.9
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 8.2e-123 444.9 508 52.2
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 3.2e-119 433.0 438 55.5
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 3.6e-118 429.5 512 49.4
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.6e-116 423.3 510 49.6
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.8e-115 419.9 501 49.9
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 8.2e-115 418.3 498 50.0
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.4e-114 417.5 480 52.1
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 9.1e-114 414.8 547 48.6
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.6e-113 413.3 499 50.1
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 3.5e-113 412.9 500 50.4
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.0e-112 411.4 503 47.5
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.7e-112 410.6 422 56.2
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 2.9e-112 409.8 508 50.0
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 3.8e-112 409.5 493 50.7
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 7.2e-111 405.2 518 48.8
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 3.6e-110 402.9 503 49.9
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 3.6e-110 402.9 489 49.7
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.7e-110 402.5 503 49.3
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 8.0e-110 401.7 389 56.8
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.8e-109 400.6 379 58.6
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.3e-109 400.2 380 58.9
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.2e-109 399.1 394 58.9
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 9.7e-108 394.8 394 58.6
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.1e-106 389.8 392 58.7
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 7.0e-106 388.7 501 47.5
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.2e-105 387.9 498 47.6
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 3.8e-104 382.9 504 48.4
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 9.4e-103 378.3 508 47.2
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 6.1e-102 375.6 498 45.8
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 6.8e-101 372.1 506 48.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.8e-99 366.7 380 55.8
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 1.1e-98 364.8 389 54.0
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 7.0e-98 362.1 407 52.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.7e-97 360.1 485 46.2
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 6.5e-96 355.5 545 42.0
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 9.4e-95 351.7 517 44.9
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 4.7e-94 349.4 375 54.4
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 8.0e-94 348.6 405 51.1
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.0e-93 348.2 501 43.7
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-93 347.8 503 45.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.0e-92 344.0 390 53.3
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.2e-89 334.7 467 47.3
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 7.7e-89 332.0 380 52.1
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.8e-86 323.6 378 51.3
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.4e-85 321.2 378 51.9
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 8.9e-85 318.5 401 48.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 8.3e-83 312.0 383 50.9
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.1e-82 311.6 390 49.7
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.1e-82 311.6 503 41.6
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.0e-81 307.4 381 50.1
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 3.0e-80 303.5 382 49.2
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.5e-79 300.4 393 48.6
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 9.5e-79 298.5 462 43.9
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 4.7e-78 296.2 391 47.8
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.0e-77 295.0 377 48.5
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.1e-77 293.5 465 43.0
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.5e-76 291.2 328 55.5
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 2.0e-76 290.8 368 49.2
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.6e-76 290.4 496 40.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 5.8e-76 289.3 459 40.7
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.3e-75 288.1 365 48.5
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 9.2e-74 282.0 381 46.5
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.9e-71 274.2 390 46.2
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 6.8e-69 265.8 419 43.4
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 8.9e-69 265.4 503 39.6
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 3.1e-61 240.4 385 42.9
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.1e-58 231.9 364 41.5
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.2e-58 230.3 252 51.2
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 3.5e-57 226.9 223 52.5
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 2.3e-56 224.2 477 39.6
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 7.3e-55 219.2 248 48.0
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 6.6e-48 196.1 231 49.4
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 1.1e-47 195.3 232 47.0
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 3.2e-42 177.2 409 35.5
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.7e-40 171.4 386 35.5
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 3.6e-38 163.7 108 73.1
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.1e-34 152.1 168 48.8
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.0e-32 144.1 292 32.9
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 8.7e-32 142.5 204 39.2
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.4e-29 135.2 189 39.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.7e-27 128.3 161 42.9
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 8.4e-27 125.9 439 28.5
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.0e-24 119.0 84 71.4
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 1.5e-23 115.2 93 50.5
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 6.9e-21 106.3 254 35.0
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.8e-16 91.7 68 73.5
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 5.9e-12 76.6 117 42.7
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 6.1e-09 66.6 81 48.1


User provided reference genes

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