Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 4.9e-103 378.3 257 100.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 3.0e-60 236.1 250 63.2
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.1e-59 234.2 250 62.8
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 9.0e-57 224.6 250 67.2
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.4e-54 216.5 255 64.3
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 4.2e-54 215.7 255 68.2
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 4.6e-53 212.2 256 57.8
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.8e-52 210.3 250 68.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 2.3e-52 209.9 259 59.5
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 2.5e-51 206.5 255 45.5
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 9.6e-51 204.5 252 61.9
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 2.1e-50 203.4 245 53.9
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-50 203.0 260 66.2
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.0e-49 199.1 258 65.9
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.5e-48 197.2 256 58.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.5e-48 197.2 251 60.6
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 9.9e-48 194.5 262 45.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.3e-47 194.1 257 52.1
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 2.9e-47 193.0 252 58.7
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 6.4e-47 191.8 257 57.2
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 8.4e-47 191.4 262 56.9
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 8.4e-47 191.4 262 56.9
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.9e-46 190.3 257 51.4
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.9e-46 190.3 257 56.8
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.4e-46 189.9 262 62.6
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.4e-46 189.9 257 51.4
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.2e-46 189.5 257 51.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.2e-46 189.5 259 46.7
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.2e-46 189.5 256 58.2
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.2e-46 189.5 258 56.2
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 4.2e-46 189.1 230 60.9
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.1e-45 186.8 260 62.3
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 6.0e-45 185.3 256 61.7
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 7.9e-45 184.9 261 64.4
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.0e-44 184.5 258 43.8
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.3e-44 184.1 257 47.1
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.9e-44 182.6 262 55.7
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 5.1e-44 182.2 250 45.2
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 6.7e-44 181.8 258 52.7
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 8.7e-44 181.4 258 55.0
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 8.7e-44 181.4 260 61.9
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.5e-43 180.6 231 59.3
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 3.3e-43 179.5 250 60.4
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 4.3e-43 179.1 264 59.1
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 5.6e-43 178.7 258 54.3
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 7.4e-43 178.3 222 46.4
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 1.6e-42 177.2 248 53.2
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.6e-42 177.2 259 45.9
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 2.1e-42 176.8 221 63.8
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.1e-42 176.8 267 42.7
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 4.8e-42 175.6 258 51.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 6.2e-42 175.3 248 53.6
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 6.2e-42 175.3 255 63.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 8.2e-42 174.9 234 56.8
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.1e-41 174.5 261 53.3
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.1e-41 174.5 261 53.3
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.0e-41 172.6 259 53.3
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 5.3e-41 172.2 262 43.1
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.3e-41 172.2 256 56.2
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 6.9e-41 171.8 259 52.5
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.9e-41 171.8 208 62.0
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 9.0e-41 171.4 254 63.4
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 9.0e-41 171.4 259 45.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.2e-40 171.0 259 43.2
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.5e-40 170.6 263 60.1
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 2.0e-40 170.2 261 52.9
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.0e-40 170.2 258 50.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 2.6e-40 169.9 256 50.8
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 3.4e-40 169.5 253 54.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.4e-40 169.5 252 56.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 4.5e-40 169.1 259 52.5
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 4.5e-40 169.1 222 55.9
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.0e-39 167.9 223 55.6
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.0e-39 167.9 254 43.7
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.9e-39 166.4 274 51.1
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 3.8e-39 166.0 247 42.5
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 3.8e-39 166.0 247 40.9
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 6.5e-39 165.2 257 51.8
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 8.4e-39 164.9 257 55.6
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.1e-38 164.5 265 49.4
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.9e-38 163.7 206 59.7
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 2.5e-38 163.3 258 41.1
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 7.1e-38 161.8 250 42.0
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.5e-37 159.5 206 47.6
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 3.5e-37 159.5 232 42.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.9e-36 156.0 263 47.5
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 6.7e-36 155.2 260 39.2
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 6.7e-36 155.2 249 55.4
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 1.5e-35 154.1 119 67.2
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-35 153.7 255 39.6
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.5e-35 153.3 277 38.6
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.5e-35 153.3 217 41.9
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 3.3e-35 152.9 226 42.0
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.1e-34 150.2 227 53.7
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.8e-33 147.1 232 40.5
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.4e-33 146.7 196 64.8
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 3.1e-33 146.4 243 60.5
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.5e-32 144.1 108 69.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.6e-32 143.3 255 38.4
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 5.9e-32 142.1 226 40.3
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.3e-31 141.0 251 38.2
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.7e-31 140.6 207 53.6
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 3.8e-31 139.4 256 45.3
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 5.5e-30 135.6 191 64.9
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 9.3e-30 134.8 241 39.0
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 9.3e-30 134.8 205 53.2
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 2.1e-29 133.7 260 35.0
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 2.7e-29 133.3 124 58.9
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.0e-28 131.3 124 54.8
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.0e-28 131.3 230 47.0
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 3.0e-28 129.8 219 39.7
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.5e-27 127.5 129 53.5
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 5.7e-27 125.6 248 37.5
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 5.7e-27 125.6 248 37.5
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.3e-26 124.4 230 45.7
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 6.3e-26 122.1 213 39.4
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 1.4e-25 120.9 229 45.4
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 5.3e-25 119.0 236 44.9
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-22 110.5 179 39.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 7.4e-19 98.6 83 60.2
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 7.4e-19 98.6 130 43.1
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.0e-16 90.5 82 58.5
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 2.7e-13 80.1 79 54.4
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 5.2e-12 75.9 87 49.4
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.0e-11 73.9 209 26.3
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 4.4e-11 72.8 81 48.1
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 7.4e-11 72.0 49 71.4
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 3.7e-10 69.7 212 24.5
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.4e-09 67.8 204 24.5
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 1.8e-09 67.4 83 53.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.2e-08 64.7 242 23.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.0e-07 61.6 120 35.0
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.5e-07 58.9 98 43.9
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.5e-06 55.8 221 22.2


User provided reference genes

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