Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.3e-163 579.7 301 100.0
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 1.7e-102 376.7 263 74.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 3.1e-101 372.5 304 67.4
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 5.3e-101 371.7 230 84.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.5e-100 370.2 237 83.1
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 7.7e-100 367.9 229 83.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.0e-99 367.5 235 83.0
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.7e-99 366.7 230 83.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.7e-99 366.7 229 82.5
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.9e-98 363.2 235 81.3
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.9e-98 363.2 305 67.2
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.5e-98 362.8 301 67.4
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 4.2e-98 362.1 227 82.4
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 5.5e-98 361.7 226 85.0
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 7.2e-98 361.3 298 67.4
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.4e-98 360.9 300 67.7
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.4e-98 360.9 305 66.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.1e-97 359.8 227 82.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.7e-97 359.4 251 76.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 3.6e-97 359.0 251 77.7
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.6e-97 359.0 234 79.5
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.0e-97 357.8 227 81.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.0e-97 357.8 234 79.1
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.4e-96 357.1 235 79.1
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.8e-96 356.7 233 80.3
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.8e-96 356.7 302 65.9
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.3e-96 356.3 247 76.1
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 2.3e-96 356.3 225 80.9
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.0e-96 355.9 233 77.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.9e-96 355.5 227 81.5
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 5.2e-96 355.1 227 81.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.1e-95 354.0 282 68.8
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-95 354.0 235 78.7
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-95 354.0 227 81.1
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.5e-95 353.6 226 81.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.0e-95 353.2 244 76.6
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.0e-95 353.2 227 81.5
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.6e-95 352.8 302 65.2
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.6e-95 352.8 229 79.5
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 3.3e-95 352.4 256 73.8
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 4.4e-95 352.1 294 67.7
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 5.7e-95 351.7 319 60.8
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 7.4e-95 351.3 226 81.0
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 7.4e-95 351.3 250 75.2
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 9.7e-95 350.9 233 79.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.3e-94 350.5 234 78.2
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.7e-94 350.1 262 74.4
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 2.2e-94 349.7 213 85.0
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.2e-94 349.7 233 78.5
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.7e-94 349.0 235 77.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 3.7e-94 349.0 235 77.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 6.3e-94 348.2 271 69.4
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.1e-93 347.4 227 80.2
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.1e-93 347.4 233 78.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.1e-93 347.4 302 65.9
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.4e-93 347.1 243 74.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.4e-93 347.1 226 79.6
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.8e-93 346.7 237 77.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.8e-93 346.7 233 76.8
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.1e-93 345.9 228 80.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 4.1e-93 345.5 227 80.6
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 5.3e-93 345.1 281 70.1
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 7.0e-93 344.7 227 78.4
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 7.0e-93 344.7 228 78.1
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 9.1e-93 344.4 228 79.8
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.1e-93 344.4 242 76.4
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.2e-92 344.0 211 85.3
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 2.0e-92 343.2 230 77.4
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 2.0e-92 343.2 235 76.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 2.6e-92 342.8 227 80.2
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.6e-92 342.8 270 66.3
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.5e-92 342.4 235 76.2
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.5e-92 342.4 303 62.4
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-92 342.0 227 79.7
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 4.5e-92 342.0 227 79.7
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 7.7e-92 341.3 264 69.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 7.7e-92 341.3 235 75.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.0e-91 340.9 229 77.7
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.7e-91 340.1 228 78.5
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.2e-91 339.7 269 68.4
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 2.9e-91 339.3 228 75.9
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 2.9e-91 339.3 228 75.9
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.8e-91 339.0 228 76.8
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.8e-91 339.0 228 76.8
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.0e-91 338.6 226 78.8
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 8.5e-91 337.8 219 79.0
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.1e-90 337.4 230 76.5
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-90 337.0 229 78.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-90 337.0 230 76.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.5e-90 337.0 233 75.1
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.9e-90 336.7 229 78.6
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.9e-90 336.7 229 78.6
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.5e-90 336.3 229 77.3
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.5e-90 336.3 234 76.9
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 3.2e-90 335.9 230 76.1
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.2e-90 335.9 233 75.5
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 5.5e-90 335.1 232 75.4
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 7.2e-90 334.7 217 80.2
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 9.4e-90 334.3 307 62.5
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.2e-89 334.0 242 73.1
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.2e-89 334.0 229 77.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.6e-89 333.6 229 77.7
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.6e-89 333.6 230 76.1
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.1e-89 333.2 223 78.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.7e-89 332.8 294 65.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.6e-89 332.4 223 77.6
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 8.0e-89 331.3 233 74.2
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.4e-88 330.5 240 75.0
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.0e-88 329.3 233 74.7
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 5.2e-88 328.6 250 72.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 9.7e-87 324.3 222 77.0
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.9e-82 310.1 221 73.8
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 5.5e-82 308.5 231 70.1
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 7.2e-82 308.1 231 69.7
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 9.4e-82 307.8 263 64.3
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 1.6e-81 307.0 233 70.4
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 8.0e-81 304.7 228 71.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.4e-80 303.9 215 73.5
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 1.8e-80 303.5 232 69.4
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.8e-80 303.5 218 72.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 3.0e-80 302.8 221 71.5
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 8.8e-80 301.2 233 69.5
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.1e-77 294.3 177 83.1
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 4.1e-77 292.4 177 86.4
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.0e-75 287.7 169 87.6
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 2.3e-75 286.6 400 47.8
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.6e-71 273.1 166 84.9
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.4e-71 272.3 190 76.3
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.9e-67 259.6 220 65.9
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.2e-65 254.2 182 76.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 6.1e-65 251.9 167 79.6
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 8.0e-65 251.5 166 79.5
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.0e-64 249.2 207 69.1
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-63 247.3 190 72.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.2e-62 243.4 209 61.7
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 2.2e-62 243.4 209 61.7
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-61 240.7 173 74.0
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.3e-59 234.2 164 73.2
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.7e-59 233.8 186 67.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.6e-58 228.8 268 52.6
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.6e-57 227.3 160 77.5
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 8.3e-54 214.9 180 61.7
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.1e-53 214.5 184 59.8
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 5.4e-53 212.2 160 71.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.3e-51 207.6 186 59.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.3e-50 203.0 245 49.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 3.0e-43 179.9 175 58.3
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.6e-31 138.7 241 40.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 9.3e-29 131.7 241 35.7
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.3e-26 123.2 68 86.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.4e-21 107.1 209 36.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.9e-18 97.4 214 33.2
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.8e-16 90.9 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.4e-14 82.0 228 31.1
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 4.6e-12 76.3 42 81.0
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.9e-11 73.2 46 80.4
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.1e-09 67.4 172 33.7
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.8e-09 67.0 72 52.8
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.2e-09 65.5 41 73.2
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 1.1e-08 65.1 53 66.0
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.8e-08 64.3 178 30.9
MSTRG.5591 Avicennia marina HOM05D004368 ORTHO05D004990 2.9e-06 57.0 126 32.5


User provided reference genes

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