Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 9.9e-146 520.0 247 100.0
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 1.6e-111 406.4 245 75.1
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 8.8e-110 400.6 246 77.6
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 2.6e-109 399.1 245 73.1
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 7.4e-109 397.5 245 73.9
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 1.3e-108 396.7 245 73.5
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 2.2e-108 396.0 245 73.1
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 3.7e-108 395.2 246 76.0
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 9.1e-107 390.6 256 71.5
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 9.1e-107 390.6 246 75.2
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 2.0e-106 389.4 248 74.6
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 3.5e-106 388.7 239 75.3
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 3.8e-105 385.2 257 71.2
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 6.5e-105 384.4 239 73.6
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 1.5e-104 383.3 247 72.9
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.5e-104 383.3 246 74.4
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 4.7e-103 378.3 246 72.4
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 8.0e-103 377.5 245 74.7
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 6.7e-102 374.4 245 73.9
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 6.7e-102 374.4 246 72.4
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 8.8e-102 374.0 250 72.8
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 1.1e-101 373.6 245 73.1
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.5e-101 373.2 245 72.2
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.5e-101 373.2 247 72.9
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 4.4e-101 371.7 250 71.2
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 5.7e-101 371.3 245 72.2
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 2.2e-100 369.4 245 71.8
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 2.8e-100 369.0 243 73.3
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 4.8e-100 368.2 244 71.7
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 6.3e-100 367.9 281 65.5
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 8.2e-100 367.5 246 71.5
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 8.2e-100 367.5 241 72.6
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 1.1e-99 367.1 245 69.4
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.4e-99 366.7 247 71.3
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 2.4e-99 365.9 246 71.1
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 2.0e-98 362.8 245 70.6
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 5.9e-98 361.3 226 73.9
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 5.9e-98 361.3 240 72.1
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 1.0e-97 360.5 245 71.8
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 1.0e-97 360.5 249 70.7
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.3e-97 360.1 242 71.9
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 1.7e-97 359.8 245 71.4
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.2e-97 359.4 242 71.9
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 6.5e-97 357.8 243 70.8
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 1.5e-96 356.7 245 70.2
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 5.5e-96 354.8 243 70.0
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 7.2e-96 354.4 241 70.1
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 7.2e-96 354.4 245 70.2
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 1.2e-95 353.6 245 70.6
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 1.2e-95 353.6 247 70.4
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 1.6e-95 353.2 245 68.6
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 2.1e-95 352.8 245 71.0
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 3.6e-95 352.1 243 71.2
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 3.6e-95 352.1 243 70.8
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 1.4e-94 350.1 246 69.5
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.4e-94 350.1 241 68.5
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 1.4e-94 350.1 247 70.0
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 2.3e-94 349.4 247 69.2
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 4.0e-94 348.6 246 67.9
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 2.0e-93 346.3 243 69.1
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 2.0e-93 346.3 244 68.4
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 7.5e-93 344.4 243 68.3
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 7.5e-93 344.4 305 58.0
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 1.3e-92 343.6 249 67.1
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 1.7e-92 343.2 243 68.3
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 6.3e-92 341.3 244 68.9
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 6.3e-92 341.3 243 69.5
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 2.4e-91 339.3 244 65.6
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 4.1e-91 338.6 243 65.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 9.1e-91 337.4 259 62.2
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 1.2e-90 337.0 243 65.4
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 2.0e-90 336.3 233 68.7
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 1.3e-89 333.6 250 68.4
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 5.0e-89 331.6 244 65.6
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 2.5e-88 329.3 245 64.9
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 1.8e-86 323.2 241 63.9
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 2.0e-85 319.7 206 73.8
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 2.6e-85 319.3 300 56.0
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 2.2e-84 316.2 271 60.1
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 5.9e-82 308.1 185 77.8
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 2.8e-79 299.3 193 72.0
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 5.2e-78 295.0 279 53.8
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 4.4e-77 292.0 192 71.9
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 4.4e-77 292.0 183 76.5
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 7.5e-77 291.2 246 57.3
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 2.9e-76 289.3 252 57.9
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 4.1e-75 285.4 249 57.0
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 1.6e-74 283.5 254 59.4
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.6e-74 283.5 273 54.9
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 2.5e-72 276.2 178 73.6
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 3.6e-71 272.3 243 59.7
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 5.2e-70 268.5 269 51.7
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 2.2e-68 263.1 209 61.7
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 9.2e-67 257.7 283 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 6.0e-66 255.0 212 58.5
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 1.4e-62 243.8 289 47.8
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 9.8e-61 237.7 252 49.6
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 3.6e-55 219.2 134 75.4
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 3.2e-51 206.1 209 51.7
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 1.3e-49 200.7 136 70.6
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 2.5e-40 169.9 115 69.6
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 1.6e-31 140.6 85 75.3
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 2.0e-29 133.7 93 66.7
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 3.9e-25 119.4 89 64.0
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 2.5e-11 73.6 40 72.5
Gohir.D11G190800 Gossypium hirsutum HOM05D005677 ORTHO05D006966 1.5e-08 64.3 186 29.0
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 1.9e-08 63.9 121 31.4
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 5.7e-08 62.4 120 30.0
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 1.6e-07 60.8 221 28.5
AT3G50850 Arabidopsis thaliana HOM05D005677 ORTHO05D006966 1.6e-07 60.8 186 29.6
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 2.2e-07 60.5 161 28.6
QL06p046093 Quercus lobata HOM05D005677 ORTHO05D006966 3.7e-07 59.7 259 25.5
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 3.7e-07 59.7 198 27.3
Thhalv10027491m.g Eutrema salsugineum HOM05D005677 ORTHO05D006966 4.8e-07 59.3 178 29.2
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 8.2e-07 58.5 186 29.0
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 1.8e-06 57.4 197 27.4
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 3.1e-06 56.6 197 26.4
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 3.1e-06 56.6 197 25.9
AL8G23360 Arabidopsis lyrata HOM05D005677 ORTHO05D006966 5.3e-06 55.8 179 28.5
CiPaw.01G038100 Carya illinoinensis HOM05D005677 ORTHO05D006966 5.3e-06 55.8 230 27.0
Gorai.007G203300 Gossypium raimondii HOM05D005677 ORTHO05D006966 5.3e-06 55.8 148 30.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 5.3e-06 55.8 198 26.3
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 5.3e-06 55.8 190 26.8
HPP92_019510 Vanilla planifolia HOM05D005677 ORTHO05D006966 5.3e-06 55.8 246 26.8
arahy.Tifrunner.gnm1.ann1.6977IM Arachis hypogaea HOM05D005677 ORTHO05D006966 6.9e-06 55.5 183 27.3
CARHR281190 Cardamine hirsuta HOM05D005677 ORTHO05D006966 6.9e-06 55.5 183 27.3
Carub.0005s1724 Capsella rubella HOM05D005677 ORTHO05D006966 9.0e-06 55.1 183 27.9


User provided reference genes

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