Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 9.8e-127 456.8 234 100.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.1e-93 347.1 236 76.3
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.8e-88 329.7 237 70.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.0e-88 328.6 226 76.1
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.4e-87 325.5 236 70.3
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.8e-87 324.7 232 72.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.3e-86 323.6 252 66.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.2e-86 322.8 235 71.5
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 3.8e-86 322.0 232 70.3
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.4e-85 320.1 232 71.6
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.4e-85 319.3 232 71.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.1e-85 317.8 232 70.7
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.2e-84 317.0 232 71.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.1e-84 316.2 232 69.8
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.7e-84 315.8 232 71.6
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 4.6e-84 315.1 235 67.7
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 4.6e-84 315.1 233 70.4
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 6.0e-84 314.7 233 70.4
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.3e-83 312.8 232 66.8
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 2.3e-83 312.8 233 70.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 5.1e-83 311.6 232 66.4
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.6e-83 311.2 234 69.2
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 8.7e-83 310.8 237 65.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.5e-82 310.1 232 66.8
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 2.5e-82 309.3 242 64.0
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 3.3e-82 308.9 226 71.7
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.3e-81 307.0 228 71.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.6e-81 306.6 232 68.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.1e-81 306.2 228 67.5
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 3.6e-81 305.4 237 61.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.1e-80 303.9 224 67.9
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.4e-80 303.5 232 70.3
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 1.5e-79 300.1 229 64.6
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 5.8e-79 298.1 232 67.2
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 5.8e-79 298.1 233 67.0
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 7.6e-79 297.7 226 64.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 9.9e-79 297.4 233 68.7
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.3e-78 297.0 230 67.8
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.3e-78 297.0 225 64.9
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.3e-78 297.0 227 68.7
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-78 296.6 233 63.9
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 8.4e-78 294.3 228 68.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.1e-77 293.9 223 69.1
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.2e-77 292.4 227 62.1
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.2e-77 292.4 217 66.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.2e-77 292.0 223 61.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 4.2e-77 292.0 230 67.0
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 5.4e-77 291.6 225 60.0
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.2e-76 290.4 225 61.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.2e-76 290.4 225 60.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.2e-76 290.4 223 67.7
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-76 290.0 225 60.9
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.6e-76 290.0 223 68.2
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 2.1e-76 289.7 227 67.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.0e-76 288.1 225 63.1
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 6.0e-76 288.1 225 60.4
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.0e-75 287.3 233 58.8
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.0e-75 287.3 233 68.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.8e-75 286.6 227 64.8
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.3e-75 286.2 225 59.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 3.0e-75 285.8 229 62.9
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.0e-75 285.8 226 63.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.0e-75 285.8 230 65.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.7e-75 284.6 227 65.2
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 8.7e-75 284.3 232 65.5
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.7e-75 284.3 226 68.1
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 8.7e-75 284.3 232 65.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 8.7e-75 284.3 227 65.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 8.7e-75 284.3 222 64.9
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 8.7e-75 284.3 226 68.1
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.1e-74 283.9 232 62.9
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.5e-74 283.5 221 66.5
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.5e-74 282.7 225 58.7
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.5e-74 282.7 232 66.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 5.6e-74 281.6 239 57.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 9.6e-74 280.8 227 64.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.3e-73 280.4 234 63.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 6.2e-73 278.1 229 64.6
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 8.1e-73 277.7 225 61.3
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 8.1e-73 277.7 225 61.3
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.4e-72 276.9 229 64.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.4e-72 276.9 236 64.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.4e-72 276.2 240 57.9
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-72 276.2 233 56.7
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 5.3e-72 275.0 230 63.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 5.3e-72 275.0 169 75.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 9.0e-72 274.2 214 63.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.2e-71 273.9 239 58.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-71 273.5 208 66.8
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.5e-71 273.5 239 58.2
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 7.6e-71 271.2 251 60.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.7e-70 270.0 248 57.7
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-70 270.0 230 62.2
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.7e-70 270.0 233 60.1
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 2.9e-70 269.2 256 59.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-70 269.2 235 61.7
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.9e-70 269.2 226 64.2
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.8e-70 268.9 229 64.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-69 267.3 224 64.3
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.4e-69 266.9 275 53.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 1.4e-69 266.9 229 60.7
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.2e-69 265.8 223 58.7
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.2e-69 265.4 248 57.7
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 7.1e-69 264.6 160 76.2
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.2e-68 263.8 252 59.1
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.3e-67 260.4 227 63.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.0e-67 259.2 274 55.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.0e-67 259.2 227 57.7
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.1e-67 258.5 228 64.0
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 5.1e-67 258.5 225 59.1
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 6.7e-67 258.1 227 56.4
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.7e-67 258.1 227 56.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.7e-67 258.1 227 56.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.5e-66 256.9 213 62.0
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-66 256.9 227 56.4
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.9e-66 256.5 226 60.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.3e-66 255.8 225 56.9
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.6e-66 254.2 232 56.5
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.7e-65 252.3 168 71.4
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 6.2e-65 251.5 232 55.6
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.2e-65 251.5 232 57.3
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 6.2e-65 251.5 239 55.6
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.4e-64 250.4 227 55.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 5.3e-64 248.4 227 58.1
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 9.0e-64 247.7 145 79.3
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.0e-63 246.5 233 56.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.6e-63 246.1 234 57.3
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 4.5e-63 245.4 255 54.1
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 5.8e-63 245.0 216 54.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 5.5e-61 238.4 261 51.7
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.9e-59 232.3 139 77.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 3.9e-59 232.3 247 52.6
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.3e-58 228.8 198 62.6
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.3e-57 227.3 146 71.9
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.8e-56 223.4 145 71.0
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.4e-56 223.0 142 70.4
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.2e-55 220.7 140 72.9
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.5e-53 211.8 179 62.0
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.1e-52 208.4 131 74.0
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.7e-50 201.8 276 43.5
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.1e-48 197.6 128 75.8
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.9e-45 186.8 127 69.3
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.2e-45 185.7 148 57.4
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 9.4e-45 184.5 122 68.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.4e-45 184.5 140 63.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 7.4e-42 174.9 147 53.7
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.3e-40 168.7 97 77.3
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 6.1e-36 155.2 146 58.9
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.4e-34 148.3 233 41.6
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 9.7e-34 147.9 98 67.3
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 2.0e-26 123.6 97 64.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 6.3e-25 118.6 115 51.3
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.4e-24 116.7 185 38.4
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 9.1e-24 114.8 227 29.5
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 1.4e-19 100.9 102 62.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 4.0e-19 99.4 79 57.0
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 8.8e-19 98.2 123 39.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.2e-15 87.8 142 33.8
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.6e-15 87.4 144 34.0
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.0e-15 87.0 88 62.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.8e-14 82.8 117 35.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.5e-13 80.1 80 50.0
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.0e-11 73.2 98 51.0
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.2e-10 71.2 87 57.5
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.2e-10 71.2 95 52.6
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 1.3e-09 67.8 73 46.6
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 7.8e-07 58.5 56 44.6


User provided reference genes

Program Settings