Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 4.5e-129 464.5 225 100.0
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 3.0e-101 372.1 200 85.5
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.5e-100 369.8 215 78.6
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.0e-100 369.4 200 84.5
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 7.5e-100 367.5 200 85.5
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 1.3e-99 366.7 214 79.9
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 1.3e-99 366.7 215 80.9
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 3.7e-99 365.2 215 78.1
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 2.4e-98 362.5 225 75.1
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 2.4e-98 362.5 212 81.1
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 9.2e-98 360.5 215 79.1
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 1.6e-97 359.8 200 82.0
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 2.0e-97 359.4 217 77.9
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 2.7e-97 359.0 215 78.6
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 3.5e-97 358.6 200 83.5
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 3.5e-97 358.6 200 83.5
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 3.5e-97 358.6 215 76.7
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 3.5e-97 358.6 216 78.2
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 5.9e-97 357.8 221 77.8
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 7.8e-97 357.5 211 76.8
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 1.3e-96 356.7 227 76.7
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 1.7e-96 356.3 200 83.0
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 3.9e-96 355.1 225 75.6
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 5.0e-96 354.8 198 83.3
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.1e-95 353.6 200 80.5
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 2.5e-95 352.4 215 75.8
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 4.3e-95 351.7 200 80.5
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 5.6e-95 351.3 225 73.8
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 5.6e-95 351.3 200 79.0
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 7.3e-95 350.9 200 78.5
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 7.3e-95 350.9 200 77.5
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 9.5e-95 350.5 200 78.5
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 1.2e-94 350.1 226 74.8
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 1.6e-94 349.7 198 81.3
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 1.6e-94 349.7 198 80.3
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 2.1e-94 349.4 212 75.5
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 2.8e-94 349.0 200 79.5
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.6e-94 348.6 221 74.7
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 3.6e-94 348.6 198 80.8
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 8.0e-94 347.4 200 79.0
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 8.0e-94 347.4 200 79.0
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 1.4e-93 346.7 214 76.2
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 1.4e-93 346.7 212 75.0
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 1.4e-93 346.7 200 76.5
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 1.8e-93 346.3 198 80.3
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.8e-93 346.3 199 80.4
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.8e-93 346.3 200 80.5
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 5.2e-93 344.7 198 79.3
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 6.8e-93 344.4 212 75.9
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 8.9e-93 344.0 199 78.4
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 1.2e-92 343.6 199 76.4
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 2.0e-92 342.8 200 77.5
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 2.0e-92 342.8 198 78.8
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 2.0e-92 342.8 200 80.0
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 2.0e-92 342.8 221 73.8
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 2.6e-92 342.4 222 70.3
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 3.4e-92 342.0 200 79.5
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 2.2e-91 339.3 215 73.5
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 2.9e-91 339.0 200 75.5
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 2.9e-91 339.0 200 75.5
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 3.7e-91 338.6 200 77.0
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.9e-91 338.2 221 73.3
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 3.2e-90 335.5 200 75.0
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 9.2e-90 334.0 200 76.5
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 9.2e-90 334.0 221 72.4
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 1.2e-86 323.6 219 68.5
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 8.1e-86 320.9 217 68.7
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 2.3e-85 319.3 214 70.6
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 5.2e-85 318.2 217 68.7
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 5.2e-85 318.2 199 73.9
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 6.8e-85 317.8 217 68.7
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 1.2e-84 317.0 203 71.4
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.2e-84 317.0 265 60.0
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 1.5e-84 316.6 198 73.2
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 5.8e-84 314.7 203 70.4
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 7.5e-84 314.3 215 68.8
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 1.7e-83 313.2 204 74.0
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 2.9e-83 312.4 178 81.5
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 3.7e-83 312.0 220 67.3
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 3.7e-83 312.0 220 67.3
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.4e-82 310.1 188 72.9
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 3.9e-80 302.0 168 78.6
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 6.2e-78 294.7 178 74.7
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 1.8e-77 293.1 215 67.4
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 7.6e-76 287.7 158 76.6
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 9.9e-76 287.3 158 79.1
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 1.0e-72 277.3 201 62.2
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.0e-72 277.3 180 70.6
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 5.8e-68 261.5 153 76.5
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 8.4e-67 257.7 199 65.3
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 6.6e-64 248.1 191 57.1
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.3e-63 245.7 167 67.7
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 3.3e-63 245.7 140 80.7
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 9.0e-61 237.7 215 52.1
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 7.6e-60 234.6 198 58.6
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 1.3e-59 233.8 215 58.6
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 2.3e-56 223.0 130 77.7
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 1.4e-53 213.8 114 80.7
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 1.1e-47 194.1 115 79.1
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 5.3e-45 185.3 91 89.0
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 9.0e-45 184.5 112 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.2e-44 184.1 149 51.7
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 2.1e-38 163.3 213 36.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.3e-35 154.1 206 33.5
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 7.2e-34 148.3 128 59.4
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 6.1e-33 145.2 128 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.3e-27 127.5 101 52.5
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 2.9e-27 126.3 172 33.7
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 3.2e-26 122.9 86 64.0
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 2.1e-25 120.2 81 65.4
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.8e-22 109.8 60 73.3
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 9.1e-21 104.8 73 61.6
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.7e-17 92.4 51 76.5
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.7e-17 92.4 51 76.5
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 1.1e-15 87.8 71 59.2
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 1.5e-10 70.9 58 67.2
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 2.3e-08 63.5 92 43.5
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.1e-07 61.2 43 58.1


User provided reference genes

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