Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 1.3e-114 416.4 205 100.0
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 4.2e-25 119.0 190 43.7
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 5.5e-25 118.6 198 42.4
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 7.2e-25 118.2 198 42.4
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 2.6e-22 109.8 184 39.7
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 3.4e-22 109.4 190 42.1
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 3.7e-21 105.9 171 43.9
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 1.4e-20 104.0 202 38.1
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.4e-20 104.0 180 40.0
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 2.4e-20 103.2 202 38.1
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.2e-19 100.9 153 43.1
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.2e-19 100.9 154 46.1
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 2.0e-19 100.1 151 45.0
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.7e-19 99.8 151 41.1
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 5.9e-19 98.6 151 41.1
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 1.0e-18 97.8 210 37.1
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 1.0e-18 97.8 210 37.1
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.3e-18 97.4 177 41.8
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 3.8e-18 95.9 198 33.3
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.0e-18 95.5 151 41.1
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 8.6e-18 94.7 202 39.6
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.5e-17 94.0 151 40.4
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.5e-17 93.2 153 40.5
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 2.5e-17 93.2 153 40.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 4.2e-17 92.4 151 39.7
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 4.2e-17 92.4 191 35.6
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 5.5e-17 92.0 204 36.8
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 5.5e-17 92.0 151 41.1
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.2e-17 91.7 202 38.6
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 3.6e-16 89.4 157 41.4
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 6.1e-16 88.6 151 39.1
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 8.0e-16 88.2 152 39.5
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 3.0e-15 86.3 151 40.4
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.0e-15 86.3 166 40.4
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.0e-15 85.9 183 37.7
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 4.0e-15 85.9 151 41.7
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 5.2e-15 85.5 162 42.0
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 5.2e-15 85.5 167 37.1
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 3.4e-14 82.8 152 42.1
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 5.7e-14 82.0 166 40.4
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 5.7e-14 82.0 151 39.7
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 5.7e-14 82.0 189 36.5
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 9.8e-14 81.3 183 37.2
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.3e-13 80.9 152 39.5
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.3e-13 80.9 152 40.8
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 2.2e-13 80.1 151 36.4
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 2.2e-13 80.1 153 37.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 2.8e-13 79.7 151 37.1
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 2.8e-13 79.7 154 40.3
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 3.7e-13 79.3 152 40.8
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 3.7e-13 79.3 153 37.9
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 4.9e-13 79.0 151 37.7
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 6.3e-13 78.6 174 36.2
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 6.3e-13 78.6 187 35.8
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 8.3e-13 78.2 158 38.0
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 8.3e-13 78.2 153 37.3
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.1e-12 77.8 159 38.4
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.4e-12 77.4 153 37.9
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.4e-12 77.4 158 38.0
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 3.1e-12 76.3 174 35.1
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.1e-12 75.9 154 35.1
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 7.0e-12 75.1 183 32.8
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 7.0e-12 75.1 151 35.1
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.2e-11 74.3 199 33.2
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.6e-11 73.9 198 32.3
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 3.5e-11 72.8 152 38.8
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 3.5e-11 72.8 151 34.4
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.9e-11 72.0 144 37.5
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 7.8e-11 71.6 159 37.7
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.7e-10 70.5 153 34.6
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.9e-10 69.7 179 33.0
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.0e-10 68.9 151 34.4
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.9e-09 67.0 188 31.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 2.5e-09 66.6 157 36.3
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 5.6e-09 65.5 200 34.5
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 5.6e-09 65.5 200 34.5
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 1.6e-08 63.9 157 33.1
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.1e-08 63.5 125 37.6
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 4.7e-08 62.4 163 27.6
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.8e-07 60.5 152 30.3
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 3.0e-07 59.7 157 31.8
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 1.2e-06 57.8 178 32.0
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.6e-06 56.6 160 31.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.4e-06 56.2 150 31.3
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 5.7e-06 55.5 129 34.9
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 5.7e-06 55.5 159 30.2
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 9.8e-06 54.7 150 30.7


User provided reference genes

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