Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.8e-249 864.4 434 100.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.7e-199 698.7 433 79.2
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 8.2e-196 687.2 433 77.1
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.1e-195 686.8 433 77.8
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 2.4e-195 685.6 433 76.2
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 2.9e-193 678.7 433 76.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 8.5e-193 677.2 433 75.5
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.9e-192 676.0 433 75.1
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.5e-192 674.5 433 74.1
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.6e-191 672.9 433 75.1
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.1e-191 672.5 433 76.4
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 2.7e-191 672.2 430 75.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 8.0e-191 670.6 433 74.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 8.0e-191 670.6 433 74.1
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.0e-190 668.7 433 73.9
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 6.8e-190 667.5 432 75.7
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 6.8e-190 667.5 433 74.1
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.2e-189 666.8 433 75.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.4e-189 664.8 429 76.2
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.7e-188 662.9 433 73.0
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.7e-188 662.9 433 73.7
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.8e-188 662.1 433 74.4
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 2.8e-188 662.1 433 73.2
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.7e-188 661.8 431 73.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.3e-188 661.0 433 74.1
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.8e-187 659.4 429 75.3
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 4.1e-187 658.3 434 75.3
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 9.1e-187 657.1 432 73.6
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 4.5e-186 654.8 433 72.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.0e-185 653.7 429 74.4
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.0e-185 653.7 433 72.5
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.3e-185 653.3 433 72.3
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.8e-185 651.7 429 74.1
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 5.0e-185 651.4 433 71.8
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 3.3e-184 648.7 471 69.2
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 9.5e-184 647.1 431 72.6
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 9.5e-184 647.1 430 73.0
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 2.1e-183 646.0 434 72.6
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 6.1e-183 644.4 459 71.2
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.8e-182 642.9 434 71.9
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.8e-182 642.9 432 73.1
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 3.0e-182 642.1 431 71.9
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 6.8e-182 641.0 426 73.7
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 1.2e-181 640.2 437 70.9
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.4e-181 638.3 432 72.5
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 5.7e-181 637.9 435 72.9
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 1.7e-180 636.3 433 70.2
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 6.3e-180 634.4 433 70.0
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 6.3e-180 634.4 430 70.2
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.6e-178 629.8 432 71.1
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.7e-177 626.3 426 70.9
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 3.9e-177 625.2 524 60.9
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.1e-176 623.6 430 70.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.5e-176 622.5 430 70.5
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 4.3e-176 621.7 428 70.3
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 5.6e-176 621.3 429 69.5
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.2e-175 620.2 434 69.4
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 2.1e-175 619.4 430 70.2
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 3.6e-175 618.6 432 70.1
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 3.6e-175 618.6 436 70.6
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 4.7e-175 618.2 433 69.3
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 1.8e-174 616.3 432 70.1
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 3.1e-174 615.5 434 70.7
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 2.6e-173 612.5 433 69.1
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 4.4e-173 611.7 432 69.9
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.7e-172 609.8 431 69.6
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.2e-171 605.5 431 69.1
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 7.0e-171 604.4 429 70.2
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 4.6e-170 601.7 375 78.1
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 4.6e-170 601.7 438 68.9
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 7.8e-170 600.9 433 70.2
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-169 600.5 433 69.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 8.6e-169 597.4 440 68.0
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.5e-168 596.7 474 64.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 3.3e-168 595.5 416 70.0
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 3.3e-168 595.5 474 63.7
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 3.3e-168 595.5 432 68.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 4.3e-168 595.1 431 67.7
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 2.1e-167 592.8 416 70.0
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.7e-164 583.2 473 63.6
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 2.9e-164 582.4 513 59.1
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 7.8e-162 574.3 431 65.2
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.3e-160 568.5 429 64.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.2e-159 567.0 433 65.4
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.6e-157 559.3 362 77.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 2.2e-156 556.2 432 65.3
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-154 550.4 434 64.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 3.5e-154 548.9 379 70.7
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 6.0e-154 548.1 445 62.5
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.0e-153 547.4 421 65.1
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.5e-152 543.5 431 64.7
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 5.6e-152 541.6 423 66.0
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 5.2e-150 535.0 380 69.2
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.2e-149 533.9 380 68.9
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 4.4e-149 531.9 695 46.6
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 1.3e-148 530.4 376 69.1
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 2.5e-144 516.2 430 62.6
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 9.6e-144 514.2 449 59.5
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 5.3e-142 508.4 730 41.8
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 2.9e-140 502.7 362 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 9.3e-131 471.1 433 55.2
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 4.5e-125 452.2 300 73.0
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.6e-122 442.2 317 69.4
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.0e-121 441.0 431 51.3
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.8e-121 440.3 339 66.7
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 5.7e-120 435.3 295 73.2
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 4.8e-119 432.2 431 50.8
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 9.3e-115 417.9 341 62.8
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.0e-109 400.2 436 49.5
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 2.2e-95 353.6 350 51.1
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 6.7e-89 332.0 223 75.8
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.0e-82 308.5 248 63.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.0e-81 308.1 219 71.7
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 8.8e-73 278.5 234 65.0
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.1e-70 269.6 161 80.7
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 3.8e-68 263.1 433 39.3
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.8e-68 263.1 283 52.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.5e-67 260.4 432 35.2
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 2.1e-66 257.3 215 63.7
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 8.0e-58 228.8 130 80.8
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.2e-55 220.7 159 66.7
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.1e-50 204.1 134 76.1
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.9e-47 193.0 140 67.9
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 6.4e-47 192.6 142 66.9
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 4.1e-38 163.3 200 50.0
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 4.1e-38 163.3 320 34.1
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 7.1e-38 162.5 193 50.8
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 3.0e-36 157.1 149 52.3
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.6e-27 126.3 120 54.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 2.4e-25 120.9 146 50.7
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 5.3e-25 119.8 97 57.7
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.1e-18 97.8 79 58.2
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 8.1e-18 95.9 55 74.5
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 2.4e-17 94.4 71 63.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 3.4e-16 90.5 71 62.0
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 9.9e-16 89.0 71 62.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.2e-13 82.0 85 47.1
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.1e-13 81.3 54 75.9
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.9e-11 74.7 78 51.3
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 4.3e-11 73.6 43 76.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.1e-09 67.4 47 63.8
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 1.7e-07 61.6 37 73.0
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.2e-06 57.4 39 69.2


User provided reference genes

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