Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g00020 Coffea canephora HOM05D000186 ORTHO05D029062 1.4e-75 286.2 147 100.0
Dinv01964 Davidia involucrata HOM05D000186 ORTHO05D006806 2.0e-32 142.9 112 66.1
Oeu063838.1 Olea europaea HOM05D000186 ORTHO05D006806 2.9e-28 129.0 116 59.5
SGA_v2.0_scaffold85G26583 Striga asiatica HOM05D000186 ORTHO05D006806 6.5e-28 127.9 115 59.1
Actinidia29001 Actinidia chinensis HOM05D000186 ORTHO05D006806 1.5e-27 126.7 131 53.4
MSTRG.5476 Avicennia marina HOM05D000186 ORTHO05D006806 2.5e-27 125.9 122 59.8
Nitab4.5_0001700g0050 Nicotiana tabacum HOM05D000186 ORTHO05D006806 6.1e-26 121.3 121 56.2
Nitab4.5_0012032g0010 Nicotiana tabacum HOM05D000186 ORTHO05D006806 1.8e-25 119.8 121 54.5
Migut.J00004 Erythranthe guttata HOM05D000186 ORTHO05D006806 7.5e-24 114.4 121 55.4
CSS0042957 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D006806 9.8e-24 114.0 116 55.2
Solyc10g074650.2 Solanum lycopersicum HOM05D000186 ORTHO05D006806 2.8e-23 112.5 107 58.9
Sopen10g027140 Solanum pennellii HOM05D000186 ORTHO05D006806 8.3e-23 110.9 107 57.9
vmacro20097 Vaccinium macrocarpon HOM05D000186 ORTHO05D006806 8.3e-23 110.9 116 50.9
CAN.G751.5 Capsicum annuum HOM05D000186 ORTHO05D006806 7.0e-22 107.8 107 57.9
CANSAT21G1223 Cannabis sativa HOM05D000186 ORTHO05D006806 1.3e-20 103.6 110 55.5
arahy.Tifrunner.gnm1.ann1.L7YTM2 Arachis hypogaea HOM05D000186 ORTHO05D006806 8.6e-20 100.9 120 50.8
Oeu013183.3 Olea europaea HOM05D000186 ORTHO05D006806 8.6e-20 100.9 154 43.5
arahy.Tifrunner.gnm1.ann1.H95TME Arachis hypogaea HOM05D000186 ORTHO05D006806 1.1e-19 100.5 120 50.8
Lj1g0025586 Lotus japonicus HOM05D000186 ORTHO05D006806 7.2e-19 97.8 119 52.1
QL07p030191 Quercus lobata HOM05D000186 ORTHO05D006806 9.5e-19 97.4 107 53.3
QL07p030837 Quercus lobata HOM05D000186 ORTHO05D006806 9.5e-19 97.4 107 53.3
SGA_v2.0_scaffold373G50206 Striga asiatica HOM05D000186 ORTHO05D006806 9.5e-19 97.4 135 45.2
Glyma.18G220200 Glycine max HOM05D000186 ORTHO05D006806 2.1e-18 96.3 109 52.3
VMungo1383G2067 Vigna mungo HOM05D000186 ORTHO05D006806 2.8e-18 95.9 114 51.8
ClCG04G005130 Citrullus lanatus HOM05D000186 ORTHO05D006806 3.6e-18 95.5 105 55.2
Glyma.09G269900 Glycine max HOM05D000186 ORTHO05D006806 6.1e-18 94.7 114 52.6
Cfa016975 Carpinus fangiana HOM05D000186 ORTHO05D006806 8.0e-18 94.4 114 50.0
Lsat_1_v5_gn_9_40241 Lactuca sativa HOM05D000186 ORTHO05D006806 1.0e-17 94.0 124 50.8
Sc02g0000130 Simmondsia chinensis HOM05D000186 ORTHO05D029062 1.0e-17 94.0 118 49.2
Lalb_Chr19g0123851 Lupinus albus HOM05D000186 ORTHO05D006806 1.4e-17 93.6 103 56.3
ECA247G0468 Erigeron canadensis HOM05D002393 ORTHO05D002845 2.3e-17 92.8 122 48.4
Phvul.008G076900 Phaseolus vulgaris HOM05D000186 ORTHO05D006806 2.3e-17 92.8 112 52.7
TAR633G2554 Trochodendron aralioides HOM05D000186 ORTHO05D006806 2.3e-17 92.8 113 48.7
Sed0018545 Sechium edule HOM05D000186 ORTHO05D006806 4.0e-17 92.0 112 52.7
Psat3g116680 Pisum sativum HOM05D000186 ORTHO05D006806 5.2e-17 91.7 114 50.9
Prupe.6G301000 Prunus persica HOM05D000186 ORTHO05D006806 8.9e-17 90.9 114 51.8
MELO3C025283.2 Cucumis melo HOM05D000186 ORTHO05D006806 1.5e-16 90.1 117 48.7
CsaV3_4G013490 Cucumis sativus L. HOM05D000186 ORTHO05D006806 2.6e-16 89.4 117 48.7
MD04G1181600 Malus domestica HOM05D000186 ORTHO05D006806 3.4e-16 89.0 122 49.2
Medtr7g074680 Medicago truncatula HOM05D000186 ORTHO05D006806 4.4e-16 88.6 119 48.7
Sed0003702 Sechium edule HOM05D000186 ORTHO05D006806 5.7e-16 88.2 108 48.1
FAN09G1435 Fragaria x ananassa HOM05D000186 ORTHO05D006806 7.5e-16 87.8 105 46.7
HanXRQChr10g0286521 Helianthus annuus HOM05D000186 ORTHO05D006806 9.8e-16 87.4 125 47.2
AUR62037720 Chenopodium quinoa HOM05D000186 ORTHO05D006806 1.3e-15 87.0 101 50.5
FAN05G4446 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.7e-15 86.7 105 45.7
Nn5g26724 Nelumbo nucifera HOM05D000186 ORTHO05D006806 1.7e-15 86.7 119 47.9
MD12G1196400 Malus domestica HOM05D000186 ORTHO05D006806 2.2e-15 86.3 115 49.6
TPR.G3223 Trifolium pratense HOM05D000186 ORTHO05D006806 2.8e-15 85.9 113 46.9
Gohir.D09G215600 Gossypium hirsutum HOM05D000186 ORTHO05D006806 3.7e-15 85.5 113 46.9
Lalb_Chr01g0024051 Lupinus albus HOM05D000186 ORTHO05D006806 3.7e-15 85.5 106 48.1
Atru.chr8.16 Acer truncatum HOM05D000186 ORTHO05D006806 4.9e-15 85.1 114 48.2
Gohir.D02G112200 Gossypium hirsutum HOM05D000186 ORTHO05D006806 4.9e-15 85.1 122 46.7
Gorai.005G129100 Gossypium raimondii HOM05D000186 ORTHO05D006806 4.9e-15 85.1 122 46.7
FAN02G1194 Fragaria x ananassa HOM05D000186 ORTHO05D006806 6.3e-15 84.7 105 45.7
THA.LOC104806306 Tarenaya hassleriana HOM05D000186 ORTHO05D006806 6.3e-15 84.7 135 43.7
FvH4_6g09030 Fragaria vesca HOM05D000186 ORTHO05D006806 1.1e-14 84.0 102 47.1
FAN14G3857 Fragaria x ananassa HOM05D000186 ORTHO05D006806 1.1e-14 84.0 102 47.1
Aqoxy2G00610 Aquilegia oxysepala HOM05D000186 ORTHO05D006806 1.8e-14 83.2 114 47.4
Ciclev10011265m.g Citrus clementina HOM05D000186 ORTHO05D006806 1.8e-14 83.2 141 38.3
PSO384G5073 Papaver somniferum HOM05D000186 ORTHO05D006806 1.8e-14 83.2 103 51.5
PSO339G6692 Papaver somniferum HOM05D000186 ORTHO05D006806 4.1e-14 82.0 126 44.4
Gorai.006G236100 Gossypium raimondii HOM05D000186 ORTHO05D006806 5.4e-14 81.6 113 46.0
Eucgr.A00881 Eucalyptus grandis HOM05D000186 ORTHO05D006806 7.0e-14 81.3 115 48.7
HanXRQChr15g0464651 Helianthus annuus HOM05D000186 ORTHO05D006806 9.2e-14 80.9 113 44.2
Gohir.A09G213674 Gossypium hirsutum HOM05D000186 ORTHO05D006806 2.0e-13 79.7 113 45.1
RcHm_v2.0_Chr3g0459281 Rosa chinensis HOM05D000186 ORTHO05D006806 2.7e-13 79.3 110 41.8
Duzib151G0189 Durio zibethinus HOM05D000186 ORTHO05D006806 3.5e-13 79.0 114 46.5
AUR62020285 Chenopodium quinoa HOM05D000186 ORTHO05D006806 7.8e-13 77.8 98 48.0
Hund03682 Selenicereus undatus HOM05D000186 ORTHO05D006806 7.8e-13 77.8 134 41.8
Peaxi162Scf00374g00724 Petunia axillaris HOM05D000186 ORTHO05D006806 1.0e-12 77.4 115 44.3
GSVIVG01029827001 Vitis vinifera HOM05D000186 ORTHO05D006806 1.3e-12 77.0 53 75.5
Thecc.04G063300 Theobroma cacao HOM05D000186 ORTHO05D006806 3.8e-12 75.5 115 42.6
CiPaw.10G167500 Carya illinoinensis HOM05D000186 ORTHO05D006806 6.6e-12 74.7 54 74.1
Lj2C52T9 Lonicera japonica HOM05D000186 ORTHO05D029062 6.6e-12 74.7 49 83.7
Ah.12g061270 Amaranthus hybridus HOM05D000186 ORTHO05D006806 1.1e-11 73.9 111 48.6
Haze_21234 Corylus avellana HOM05D000186 ORTHO05D006806 1.9e-11 73.2 152 36.8
Manes.09G119300 Manihot esculenta HOM05D000186 ORTHO05D006806 4.3e-11 72.0 122 42.6
Manes.08G165700 Manihot esculenta HOM05D000186 ORTHO05D006806 7.3e-11 71.2 114 48.2
Potri.016G143966 Populus trichocarpa HOM05D000186 ORTHO05D006806 7.3e-11 71.2 105 47.6
C03p25440 Brassica napus HOM05D000186 ORTHO05D006806 2.8e-10 69.3 131 39.7
BcaC01g05520 Brassica carinata HOM05D000186 ORTHO05D006806 3.6e-10 68.9 131 39.7
BolC3t14935H Brassica oleracea HOM05D000186 ORTHO05D006806 3.6e-10 68.9 131 39.7
PGR004G1439 Punica granatum HOM05D000186 ORTHO05D006806 3.6e-10 68.9 124 37.1
Rhsim05G0185300 Rhododendron simsii HOM05D000186 ORTHO05D006806 4.7e-10 68.6 111 39.6
BraA03t11384Z Brassica rapa HOM05D000186 ORTHO05D006806 8.0e-10 67.8 132 38.6
Potri.006G114300 Populus trichocarpa HOM05D000186 ORTHO05D006806 1.4e-09 67.0 110 47.3
A03p21490 Brassica napus HOM05D000186 ORTHO05D006806 1.8e-09 66.6 131 38.9
PGR031G2837 Punica granatum HOM05D000186 ORTHO05D006806 1.8e-09 66.6 118 40.7
Aa31LG5G23300 Aethionema arabicum HOM05D000186 ORTHO05D006806 3.1e-09 65.9 85 49.4
BraA04t18415Z Brassica rapa HOM05D000186 ORTHO05D006806 3.1e-09 65.9 126 36.5
Thhalv10016387m.g Eutrema salsugineum HOM05D000186 ORTHO05D006806 3.1e-09 65.9 117 41.0
BcaB01g03668 Brassica carinata HOM05D000186 ORTHO05D006806 4.0e-09 65.5 138 37.7
Sabra06G0089200 Salix brachista HOM05D000186 ORTHO05D006806 4.0e-09 65.5 110 46.4
A04p29480 Brassica napus HOM05D000186 ORTHO05D006806 6.8e-09 64.7 146 37.0
AT2G38650 Arabidopsis thaliana HOM05D000186 ORTHO05D006806 1.5e-08 63.5 117 39.3
AL4G35930 Arabidopsis lyrata HOM05D000186 ORTHO05D006806 2.0e-08 63.2 117 39.3
BraA05t19710Z Brassica rapa HOM05D000186 ORTHO05D006806 2.0e-08 63.2 121 38.8
BcaC02g07455 Brassica carinata HOM05D000186 ORTHO05D006806 2.6e-08 62.8 117 37.6
A05p07450 Brassica napus HOM05D000186 ORTHO05D006806 3.4e-08 62.4 118 38.1
Sp4g20990 Schrenkiella parvula HOM05D000186 ORTHO05D006806 3.4e-08 62.4 129 38.8
Carub.0004s2063 Capsella rubella HOM05D000186 ORTHO05D006806 5.8e-08 61.6 101 41.6
C04p08910 Brassica napus HOM05D000186 ORTHO05D006806 1.3e-07 60.5 117 36.8
BolC4t22481H Brassica oleracea HOM05D000186 ORTHO05D006806 1.3e-07 60.5 117 36.8
COL.COLO4_08813 Corchorus olitorius HOM05D000186 ORTHO05D006806 6.4e-07 58.2 137 34.3
Ah.10g024810 Amaranthus hybridus HOM05D000186 ORTHO05D006806 1.1e-06 57.4 76 48.7
TWI53G1137 Tripterygium wilfordii HOM05D000186 ORTHO05D006806 1.4e-06 57.0 109 43.1
EL10Ac2g02411 Beta vulgaris HOM05D000186 ORTHO05D006806 1.9e-06 56.6 160 31.2
Gohir.A02G089300 Gossypium hirsutum HOM05D000186 ORTHO05D006806 1.9e-06 56.6 47 63.8
BolC4t28181H Brassica oleracea HOM05D000186 ORTHO05D006806 9.2e-06 54.3 130 33.1


User provided reference genes

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