Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.0e-210 734.9 500 100.0
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.0e-104 382.5 425 60.2
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 6.5e-104 382.1 332 69.3
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.5e-103 380.9 366 67.2
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 5.5e-103 379.0 334 67.7
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 5.7e-100 369.0 427 62.3
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 7.5e-100 368.6 374 62.0
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.3e-99 367.9 360 65.6
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.2e-99 367.1 422 56.9
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.8e-99 366.7 345 62.6
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.1e-98 364.8 423 57.4
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.1e-98 363.2 328 68.3
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 9.1e-98 361.7 418 56.9
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.5e-97 359.8 422 58.5
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.3e-95 353.2 374 59.6
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.6e-94 349.7 368 60.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.6e-94 349.7 328 69.2
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 8.0e-94 348.6 361 62.6
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.3e-93 347.1 378 61.6
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.0e-93 346.7 403 56.1
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 8.9e-93 345.1 423 54.6
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.4e-92 343.2 424 54.5
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 5.7e-92 342.4 419 56.3
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.7e-91 340.9 334 66.5
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 2.9e-91 340.1 338 63.6
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 6.3e-91 339.0 363 59.2
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.0e-89 334.0 428 55.4
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 5.9e-89 332.4 386 56.0
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.9e-89 332.4 416 52.9
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 7.8e-89 332.0 385 56.9
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 2.3e-88 330.5 382 61.3
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 3.3e-87 326.6 408 53.9
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.8e-86 323.6 380 60.0
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 3.6e-86 323.2 382 57.3
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 6.1e-86 322.4 376 54.3
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.8e-85 320.9 365 59.7
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.3e-85 320.5 365 58.1
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.1e-85 320.1 364 57.7
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 5.2e-85 319.3 423 49.4
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 8.9e-85 318.5 364 58.2
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.5e-84 317.8 380 52.9
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.7e-83 314.3 432 52.5
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 3.7e-83 313.2 380 52.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 6.4e-83 312.4 373 56.0
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.4e-82 311.2 198 76.3
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.9e-82 310.8 384 56.0
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.9e-82 310.8 393 56.5
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 4.1e-82 309.7 378 56.6
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.4e-82 309.3 418 52.2
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.0e-82 308.9 379 56.2
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 9.2e-82 308.5 370 57.8
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 9.2e-82 308.5 374 51.1
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 6.0e-81 305.8 364 56.9
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.3e-80 303.9 418 53.3
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 3.9e-80 303.1 383 56.1
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 6.6e-80 302.4 373 55.5
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.3e-79 300.1 340 58.8
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.3e-79 300.1 379 58.6
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 4.3e-79 299.7 326 62.0
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 9.5e-79 298.5 325 57.5
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 1.6e-78 297.7 428 54.0
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 2.1e-78 297.4 371 55.3
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 8.1e-78 295.4 395 49.9
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 8.1e-78 295.4 344 59.6
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 8.1e-78 295.4 373 52.8
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.6e-76 290.4 386 53.6
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 2.6e-76 290.4 354 58.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 2.6e-76 290.4 335 57.6
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 4.4e-76 289.7 322 56.8
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 5.8e-76 289.3 317 60.3
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.7e-75 287.7 371 48.5
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.4e-74 284.6 371 49.3
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.4e-74 283.9 317 59.6
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 9.2e-74 282.0 345 54.5
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 3.5e-73 280.0 381 46.5
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.0e-72 278.5 376 47.6
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.7e-72 277.7 401 48.6
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 6.6e-72 275.8 303 56.8
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 2.5e-71 273.9 352 52.0
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 5.6e-71 272.7 405 47.2
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 9.5e-71 271.9 346 51.7
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 9.5e-71 271.9 346 51.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.1e-70 270.8 360 48.6
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 3.1e-69 266.9 348 49.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 6.8e-69 265.8 359 48.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.0e-68 264.2 337 51.9
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 9.9e-68 261.9 374 48.9
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.2e-67 260.8 369 49.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 2.2e-67 260.8 347 51.3
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.2e-67 260.8 352 56.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 2.9e-67 260.4 347 51.3
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 3.7e-67 260.0 345 48.4
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 3.7e-67 260.0 357 48.7
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.7e-67 260.0 313 52.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.9e-67 259.6 338 50.3
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.9e-66 257.7 368 47.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.9e-66 257.7 325 52.6
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 5.4e-66 256.1 313 51.4
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.6e-65 254.6 165 74.5
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.7e-65 253.8 339 49.3
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 5.1e-64 249.6 346 51.7
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 6.6e-64 249.2 199 58.8
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 4.7e-62 243.0 339 48.1
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.6e-60 237.3 352 46.6
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.9e-55 221.1 345 44.3
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 1.6e-54 218.0 333 48.0
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 4.9e-51 206.5 177 57.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 4.9e-51 206.5 177 57.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 5.4e-50 203.0 140 67.9
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 6.6e-48 196.1 278 57.2
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 7.3e-47 192.6 607 34.3
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 5.6e-39 166.4 139 59.7
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.8e-38 163.3 107 69.2
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.8e-36 156.4 118 66.9
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 4.9e-35 153.3 90 81.1
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.8e-30 136.7 239 51.0
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.1e-29 135.6 273 39.9
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.3e-27 128.6 91 67.0
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 3.2e-26 124.0 170 38.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.7e-25 120.9 315 31.1
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.2e-22 111.3 64 82.8
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.1e-21 107.5 172 34.3
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 7.2e-18 96.3 63 74.6
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-17 95.5 62 77.4
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.3e-16 91.3 82 48.8
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 3.9e-16 90.5 62 71.0
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.2e-14 82.8 63 66.7
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 9.1e-13 79.3 94 51.1
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.0e-11 73.6 208 34.6
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 4.7e-09 67.0 239 37.7
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 4.8e-06 57.0 31 74.2


User provided reference genes

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