Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 2.6e-250 868.2 436 100.0
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 6.8e-174 614.4 398 75.4
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 8.9e-174 614.0 396 75.3
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 1.0e-169 600.5 381 78.7
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.3e-169 599.4 376 77.4
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.3e-169 599.4 426 72.5
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 3.0e-169 599.0 392 74.5
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 5.1e-169 598.2 376 77.1
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 1.5e-168 596.7 397 74.8
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 7.3e-168 594.3 390 74.6
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 1.6e-167 593.2 407 71.3
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 2.8e-167 592.4 394 74.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.8e-167 592.4 392 76.8
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 3.6e-167 592.0 393 74.6
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 6.2e-167 591.3 395 73.7
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 8.1e-167 590.9 378 77.0
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 8.1e-167 590.9 397 73.6
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.1e-166 590.5 408 72.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 1.1e-166 590.5 393 74.3
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.4e-166 590.1 396 74.2
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 2.4e-166 589.3 397 74.3
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 2.4e-166 589.3 392 73.7
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 2.4e-166 589.3 396 74.5
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 3.1e-166 589.0 396 74.2
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 4.0e-166 588.6 397 72.8
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 6.8e-166 587.8 376 76.1
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 6.8e-166 587.8 392 73.7
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 6.8e-166 587.8 392 74.0
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 8.9e-166 587.4 398 72.9
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 4.4e-165 585.1 396 73.7
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 7.6e-165 584.3 392 73.5
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.7e-164 583.2 392 73.7
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 3.8e-164 582.0 395 71.6
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 1.4e-163 580.1 394 76.4
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 1.4e-163 580.1 376 74.5
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 7.1e-163 577.8 375 75.7
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 2.3e-161 572.8 395 70.9
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 5.1e-161 571.6 378 72.2
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 1.5e-160 570.1 374 72.5
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 3.3e-160 568.9 374 71.9
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 4.3e-160 568.5 389 73.3
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 2.8e-159 565.8 396 71.0
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 6.2e-159 564.7 347 78.4
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 1.8e-158 563.1 368 73.4
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 1.8e-158 563.1 368 73.4
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 3.4e-157 558.9 398 68.3
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.8e-157 558.1 403 69.2
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.3e-156 557.0 412 66.7
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 4.9e-156 555.1 372 72.8
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 1.9e-155 553.1 382 69.6
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 3.5e-154 548.9 347 76.1
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 4.6e-154 548.5 389 72.2
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 1.1e-152 543.9 388 69.3
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 1.1e-152 543.9 400 67.8
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 7.6e-149 531.2 344 75.9
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 2.2e-148 529.6 351 73.8
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 3.8e-148 528.9 510 55.9
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 4.9e-148 528.5 354 73.7
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 1.6e-146 523.5 347 70.3
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 2.1e-146 523.1 344 74.4
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 2.1e-146 523.1 350 74.9
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 8.7e-145 517.7 354 72.9
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 3.3e-144 515.8 368 68.2
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.2e-141 507.3 357 70.3
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 1.0e-140 504.2 358 70.9
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.4e-139 500.4 376 68.1
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 3.2e-139 499.2 354 68.9
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.8e-137 493.4 606 46.4
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.3e-137 493.0 352 70.7
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.5e-133 480.3 347 69.5
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 4.5e-133 478.8 319 72.4
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 2.2e-132 476.5 382 64.9
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.1e-131 474.2 327 69.4
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 5.5e-131 471.9 367 62.1
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.0e-129 467.6 408 61.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.8e-127 459.5 384 62.5
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.5e-125 453.8 306 72.2
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 4.5e-125 452.2 367 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 1.0e-124 451.1 387 56.8
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.6e-122 443.7 396 61.1
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.2e-117 427.6 379 56.2
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 5.9e-117 425.2 285 73.0
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 2.9e-116 422.9 294 71.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 5.5e-115 418.7 292 70.5
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 3.7e-111 406.0 277 72.9
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.2e-108 396.7 349 60.5
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 8.5e-108 394.8 283 69.6
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 5.5e-99 365.5 245 72.2
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 8.3e-95 351.7 301 62.1
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 4.2e-91 339.3 404 46.3
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.0e-80 303.9 200 71.0
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 3.2e-78 296.6 390 41.3
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 1.9e-75 287.3 221 66.5
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 4.0e-73 279.6 228 61.4
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.1e-70 271.6 172 77.9
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 2.5e-67 260.4 416 37.7
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.9e-63 246.9 213 58.2
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 1.2e-56 224.9 163 70.6
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.9e-51 207.6 123 78.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 6.6e-44 182.6 371 30.5
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.6e-42 177.9 152 55.9
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 3.1e-41 173.7 101 80.2
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 1.1e-33 148.7 107 70.1
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 1.1e-33 148.7 107 70.1
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 9.9e-32 142.1 105 66.7
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 2.2e-31 141.0 75 85.3
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 2.8e-26 124.0 74 79.7
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 7.6e-24 115.9 74 74.3
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 6.9e-17 92.8 118 46.6
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 1.3e-12 78.6 48 72.9
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.1e-11 75.5 49 75.5
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 6.3e-10 69.7 47 80.9
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 6.3e-10 69.7 118 33.1
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 1.3e-07 62.0 78 46.2


User provided reference genes

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