Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16330 Coffea canephora HOM05D007250 ORTHO05D009162 3.2e-72 275.0 141 100.0
Hma1.2p1_0151F.1_g067310 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 7.9e-55 217.2 140 75.7
Nitab4.5_0003777g0030 Nicotiana tabacum HOM05D007250 ORTHO05D009162 2.5e-53 212.2 141 71.6
Dinv19589 Davidia involucrata HOM05D007250 ORTHO05D009162 4.3e-53 211.5 141 73.0
CSS0017513 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 7.4e-53 210.7 141 75.9
Actinidia12769 Actinidia chinensis HOM05D007250 ORTHO05D000003 2.8e-52 208.8 141 73.0
CSS0024774 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 6.2e-52 207.6 141 75.9
PGSC0003DMG400011276 Solanum tuberosum HOM05D007250 ORTHO05D009162 1.8e-51 206.1 141 70.9
CAN.G492.76 Capsicum annuum HOM05D007250 ORTHO05D009162 2.4e-51 205.7 141 69.5
Solyc10g005540.4 Solanum lycopersicum HOM05D007250 ORTHO05D009162 3.1e-51 205.3 141 70.2
Sopen10g001520 Solanum pennellii HOM05D007250 ORTHO05D009162 4.0e-51 204.9 141 69.5
Peaxi162Scf00114g00116 Petunia axillaris HOM05D007250 ORTHO05D009162 9.0e-51 203.8 141 68.1
Medtr1g060720 Medicago truncatula HOM05D007250 ORTHO05D009162 1.5e-50 203.0 141 70.9
vmacro11701 Vaccinium macrocarpon HOM05D007250 ORTHO05D009162 7.6e-50 200.7 141 73.0
Nitab4.5_0008957g0010 Nicotiana tabacum HOM05D007250 ORTHO05D009162 1.7e-49 199.5 157 64.3
Lj2A15T78 Lonicera japonica HOM05D007250 ORTHO05D009162 2.2e-49 199.1 141 69.5
BraA09t41463Z Brassica rapa HOM05D007250 ORTHO05D009162 2.4e-48 195.7 140 65.0
Glyma.15G260800 Glycine max HOM05D007250 ORTHO05D009162 3.2e-48 195.3 141 67.4
Oeu034977.1 Olea europaea HOM05D007250 ORTHO05D009162 3.2e-48 195.3 163 62.6
MSTRG.16100 Avicennia marina HOM05D007250 ORTHO05D009162 7.1e-48 194.1 141 67.4
Rhsim06G0242100 Rhododendron simsii HOM05D007250 ORTHO05D009162 7.1e-48 194.1 172 61.0
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 9.3e-48 193.7 141 66.7
A09p60900 Brassica napus HOM05D007250 ORTHO05D009162 1.2e-47 193.4 140 64.3
Lj3g0020784 Lotus japonicus HOM05D007250 ORTHO05D009162 3.5e-47 191.8 141 67.4
Ca_03591_v3 Cicer arietinum L. HOM05D007250 ORTHO05D009162 4.6e-47 191.4 141 66.7
Phvul.005G050100 Phaseolus vulgaris HOM05D007250 ORTHO05D009162 6.0e-47 191.0 141 67.4
HanXRQChr05g0160551 Helianthus annuus HOM05D007250 ORTHO05D009162 7.9e-47 190.7 141 65.2
Nn3g20174 Nelumbo nucifera HOM05D007250 ORTHO05D009162 7.9e-47 190.7 141 63.8
C08p44490 Brassica napus HOM05D007250 ORTHO05D009162 1.3e-46 189.9 140 62.9
Lalb_Chr25g0284601 Lupinus albus HOM05D007250 ORTHO05D009162 1.8e-46 189.5 140 66.4
MBI18_g10574_MAGBIO Magnolia biondii HOM05D007250 ORTHO05D009162 1.8e-46 189.5 141 64.5
Carub.0001s1619 Capsella rubella HOM05D007250 ORTHO05D009162 2.3e-46 189.1 140 64.3
AUR62018167 Chenopodium quinoa HOM05D007250 ORTHO05D009162 2.3e-46 189.1 141 62.4
Thhalv10008448m.g Eutrema salsugineum HOM05D007250 ORTHO05D009162 2.3e-46 189.1 140 63.6
ClCG02G018630 Citrullus lanatus HOM05D007250 ORTHO05D009162 1.9e-45 186.0 141 62.4
CANSAT56G4154 Cannabis sativa HOM05D007250 ORTHO05D009162 2.5e-45 185.7 140 63.6
CARHR016920 Cardamine hirsuta HOM05D007250 ORTHO05D009162 2.5e-45 185.7 140 61.4
Duzib213G0161 Durio zibethinus HOM05D007250 ORTHO05D009162 2.5e-45 185.7 141 63.8
Manes.06G175800 Manihot esculenta HOM05D007250 ORTHO05D009162 2.5e-45 185.7 141 61.7
GSVIVG01036780001 Vitis vinifera HOM05D007250 ORTHO05D009162 2.5e-45 185.7 141 63.1
Potri.007G069400 Populus trichocarpa HOM05D007250 ORTHO05D009162 4.3e-45 184.9 140 64.3
AT1G16445 Arabidopsis thaliana HOM05D007250 ORTHO05D009162 7.4e-45 184.1 140 60.7
Sp1g14600 Schrenkiella parvula HOM05D007250 ORTHO05D009162 9.6e-45 183.7 140 60.7
AL1G28580 Arabidopsis lyrata HOM05D007250 ORTHO05D009162 1.6e-44 183.0 140 61.4
BolC8t51991H Brassica oleracea HOM05D007250 ORTHO05D009162 2.1e-44 182.6 150 58.7
Ciclev10005586m.g Citrus clementina HOM05D007250 ORTHO05D009162 2.1e-44 182.6 141 62.4
QL04p088484 Quercus lobata HOM05D007250 ORTHO05D009162 2.1e-44 182.6 140 65.0
QL04p088943 Quercus lobata HOM05D007250 ORTHO05D009162 2.1e-44 182.6 140 65.0
Sabra07G0056900 Salix brachista HOM05D007250 ORTHO05D009162 3.7e-44 181.8 140 62.9
Gohir.D13G127200 Gossypium hirsutum HOM05D007250 ORTHO05D009162 4.8e-44 181.4 141 62.4
Gorai.013G142400 Gossypium raimondii HOM05D007250 ORTHO05D009162 4.8e-44 181.4 141 62.4
Aa31LG7G990 Aethionema arabicum HOM05D007250 ORTHO05D009162 6.2e-44 181.0 140 59.3
unitig_748.g7850 Utricularia gibba HOM05D007250 ORTHO05D001497 6.2e-44 181.0 141 61.0
Lsat_1_v5_gn_7_75520 Lactuca sativa HOM05D007250 ORTHO05D009162 8.1e-44 180.6 140 60.0
Eucgr.F04459 Eucalyptus grandis HOM05D007250 ORTHO05D009162 1.1e-43 180.3 141 63.8
PSO541G5100 Papaver somniferum HOM05D007250 ORTHO05D009162 2.4e-43 179.1 141 60.3
CsaV3_6G013550 Cucumis sativus L. HOM05D007250 ORTHO05D009162 9.0e-43 177.2 141 60.3
Haze_07815 Corylus avellana HOM05D007250 ORTHO05D009162 1.2e-42 176.8 141 61.7
Thecc.07G179900 Theobroma cacao HOM05D007250 ORTHO05D009162 3.4e-42 175.3 141 60.3
Atru.chr1.107 Acer truncatum HOM05D007250 ORTHO05D009162 7.6e-42 174.1 115 71.3
Sed0012120 Sechium edule HOM05D007250 ORTHO05D009162 7.6e-42 174.1 141 60.3
AUR62042431 Chenopodium quinoa HOM05D007250 ORTHO05D009162 2.2e-41 172.6 137 58.4
CiPaw.11G061700 Carya illinoinensis HOM05D007250 ORTHO05D009162 4.9e-41 171.4 141 58.2
CDE01G0022 Ceratophyllum demersum HOM05D007250 ORTHO05D009162 6.5e-41 171.0 140 60.7
SGA_v2.0_scaffold7G03608 Striga asiatica HOM05D001395 ORTHO05D002039 1.1e-40 170.2 172 52.9
Migut.M01530 Erythranthe guttata HOM05D007250 ORTHO05D009162 2.5e-40 169.1 109 72.5
MD05G1040700 Malus domestica HOM05D007250 ORTHO05D009162 4.2e-40 168.3 140 56.4
TWI38G0063 Tripterygium wilfordii HOM05D007250 ORTHO05D009162 5.5e-40 167.9 140 58.6
RcHm_v2.0_Chr6g0272151 Rosa chinensis HOM05D007250 ORTHO05D009162 7.1e-40 167.5 140 57.9
ATR0165G048 Amborella trichopoda HOM05D007250 ORTHO05D009162 9.3e-40 167.2 140 55.0
FvH4_2g12161 Fragaria vesca HOM05D007250 ORTHO05D009162 7.9e-39 164.1 140 55.7
Os05g0511700 Oryza sativa ssp. japonica HOM05D007250 ORTHO05D009162 7.9e-39 164.1 141 53.9
SMO141G0022 Selaginella moellendorffii HOM05D007250 ORTHO05D009162 1.0e-38 163.7 139 59.0
Zm00001eb292510 Zea mays HOM05D007250 ORTHO05D009162 2.3e-38 162.5 142 56.3
Hma1.2p1_0151F.1_g067320 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 4.3e-37 158.3 100 79.0
Aqoxy6G01374 Aquilegia oxysepala HOM05D007250 ORTHO05D009162 5.7e-37 157.9 146 52.1
HPP92_000965 Vanilla planifolia HOM05D007250 ORTHO05D009162 1.6e-36 156.4 142 54.9
AagrBONN_evm.TU.Sc2ySwM_117.37 Anthoceros agrestis HOM05D007250 ORTHO05D009162 1.1e-35 153.7 141 52.5
Psat1g013800 Pisum sativum HOM05D007250 ORTHO05D009162 6.9e-35 151.0 118 64.4
Mapoly0102s0005 Marchantia polymorpha HOM05D007250 ORTHO05D009162 2.2e-33 146.0 141 49.6
Pp3c16_19260 Physcomitrium patens HOM05D007250 ORTHO05D009162 2.9e-33 145.6 140 49.3
EL10Ac2g03263 Beta vulgaris HOM05D007250 ORTHO05D009162 2.5e-32 142.5 232 38.4
arahy.Tifrunner.gnm1.ann1.3NS56Y Arachis hypogaea HOM05D007250 ORTHO05D009162 2.7e-31 139.0 117 61.5
Gohir.A13G123300 Gossypium hirsutum HOM05D007250 ORTHO05D009162 7.9e-31 137.5 170 47.6
SEGI_10655 Sequoiadendron giganteum HOM05D007250 ORTHO05D009162 7.9e-31 137.5 105 61.9
TAR627G0140 Trochodendron aralioides HOM05D007250 ORTHO05D009162 1.0e-30 137.1 100 67.0
Prupe.8G055300 Prunus persica HOM05D007250 ORTHO05D009162 2.5e-29 132.5 99 62.6
Hund20100 Selenicereus undatus HOM05D007250 ORTHO05D009162 2.5e-29 132.5 104 63.5
COL.COLO4_32252 Corchorus olitorius HOM05D007250 ORTHO05D009162 1.3e-28 130.2 99 66.7
CBR_g32272 Chara braunii HOM05D007250 ORTHO05D009162 2.8e-28 129.0 140 45.7
Hma1.2p1_0616F.1_g189960 Hydrangea macrophylla HOM05D007250 ORTHO05D009162 1.1e-27 127.1 118 57.6
Cre12.g517550 Chlamydomonas reinhardtii HOM05D007250 ORTHO05D009162 3.8e-25 118.6 141 44.0
FAN20G1272 Fragaria x ananassa HOM05D007250 ORTHO05D009162 8.5e-25 117.5 143 46.9
CSS0048664 Camellia sinensis var. sinensis HOM05D007250 ORTHO05D009162 1.9e-24 116.3 102 63.7
MCO03G414 Micromonas commoda HOM05D007250 ORTHO05D009162 7.4e-21 104.4 141 41.1
Cpa.g.sc34.15 Carica papaya HOM05D007250 ORTHO05D009162 2.2e-20 102.8 121 49.6
PGR031G0704 Punica granatum HOM05D007250 ORTHO05D009162 9.4e-16 87.4 141 39.7
PRCOL_00005754 Prasinoderma coloniale HOM05D007250 ORTHO05D009162 5.2e-14 81.6 149 34.2
QL03p068942 Quercus lobata HOM05D007250 ORTHO05D009162 3.8e-09 65.5 54 63.0
VMungo1080G0363 Vigna mungo HOM05D007250 ORTHO05D009162 4.7e-07 58.5 41 63.4
MELO3C019639.2 Cucumis melo HOM05D007250 ORTHO05D009162 1.8e-06 56.6 41 56.1


User provided reference genes

Program Settings