Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.1e-220 769.6 380 100.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 8.6e-173 610.5 380 78.9
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.5e-172 609.8 380 79.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.9e-172 609.4 381 79.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.8e-170 602.8 379 77.3
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.2e-170 601.3 378 77.5
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 2.6e-169 599.0 379 76.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.4e-167 593.2 378 77.0
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.9e-167 592.8 378 76.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.2e-166 590.1 380 76.3
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.2e-166 590.1 378 76.5
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.0e-166 589.3 378 76.7
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.7e-166 589.0 378 76.2
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.6e-166 588.2 380 75.5
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.0e-165 587.0 403 71.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.7e-165 586.3 381 76.1
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.3e-165 585.9 379 75.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.1e-164 583.6 382 75.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.1e-164 583.6 402 72.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.5e-164 583.2 378 76.7
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.9e-164 582.8 378 75.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.5e-164 582.4 378 75.7
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.6e-164 581.3 377 75.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.6e-163 578.6 344 80.8
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.6e-163 578.6 378 75.4
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.7e-163 578.2 378 75.1
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.2e-163 577.8 378 75.4
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.2e-163 577.8 378 76.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 6.2e-163 577.8 378 74.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 8.1e-163 577.4 381 74.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-162 576.6 379 76.5
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.4e-162 576.6 380 74.5
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 4.0e-162 575.1 382 73.8
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 5.2e-162 574.7 379 74.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 6.8e-162 574.3 380 75.0
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.9e-162 573.9 378 74.9
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.5e-161 573.2 378 73.3
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.5e-161 573.2 380 74.2
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.6e-161 572.4 379 73.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 3.4e-161 572.0 379 73.4
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 5.8e-161 571.2 319 85.0
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.3e-160 570.1 378 73.5
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.7e-160 569.7 379 74.7
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 3.7e-160 568.5 334 81.1
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 4.9e-160 568.2 380 74.2
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.3e-160 567.4 392 72.4
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 8.3e-160 567.4 379 73.6
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.1e-159 567.0 378 74.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.9e-159 566.2 380 73.4
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.9e-159 566.2 377 74.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.4e-159 565.8 320 83.1
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-158 562.4 379 73.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.0e-157 560.5 368 73.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.0e-157 560.5 377 72.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.7e-157 559.7 376 73.7
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 5.1e-157 558.1 380 71.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 5.1e-157 558.1 380 71.6
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 6.6e-157 557.8 380 72.9
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.6e-157 557.4 382 73.0
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.5e-156 556.6 381 72.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.5e-156 555.8 381 73.5
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 9.5e-156 553.9 380 70.8
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.2e-155 553.5 368 73.4
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.1e-155 552.7 320 82.2
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 2.1e-155 552.7 372 73.9
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.6e-155 552.0 382 72.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.7e-155 551.6 377 71.1
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.2e-155 551.2 379 72.6
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.4e-154 550.1 397 69.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.8e-154 549.7 379 70.7
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.4e-154 549.3 403 69.2
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.8e-154 547.7 379 70.7
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.2e-153 547.0 346 74.6
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.5e-153 546.6 378 71.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 3.4e-153 545.4 378 70.6
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.6e-153 544.3 318 79.6
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.3e-152 543.5 318 80.2
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.8e-152 542.0 378 70.9
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.4e-152 540.8 315 80.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.1e-151 540.4 322 78.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-151 540.0 379 70.7
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-151 540.0 379 70.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.4e-151 540.0 307 82.1
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 3.2e-151 538.9 377 70.3
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.4e-151 538.1 379 69.1
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 7.1e-151 537.7 379 70.4
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.1e-150 536.2 318 78.6
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.7e-150 535.8 381 68.2
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 3.5e-150 535.4 376 70.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.6e-150 535.0 379 69.7
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.6e-150 535.0 379 69.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 6.0e-150 534.6 384 70.3
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.0e-149 532.3 371 70.9
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 5.1e-149 531.6 383 68.4
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.6e-149 531.2 317 79.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-148 529.3 383 68.1
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.5e-148 529.3 378 69.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.5e-148 529.3 380 68.4
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-148 528.5 383 68.1
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.7e-147 525.0 339 74.6
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.2e-147 524.6 319 77.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.2e-147 524.6 380 67.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 8.1e-147 524.2 378 70.6
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.6e-145 519.2 383 66.6
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 3.4e-145 518.8 386 69.4
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 5.8e-145 518.1 381 68.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 8.4e-144 514.2 378 67.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-143 513.8 322 76.4
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.4e-143 513.5 345 71.0
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 3.2e-143 512.3 378 68.5
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.7e-142 509.2 303 77.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.0e-141 507.3 321 73.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.3e-141 506.1 319 74.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 6.6e-141 504.6 315 74.3
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 6.6e-141 504.6 350 72.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.3e-140 502.3 374 67.6
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 5.6e-140 501.5 378 67.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.6e-139 498.8 348 72.7
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.6e-139 498.8 322 76.1
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.1e-138 497.3 348 71.8
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.4e-138 496.9 319 73.7
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.5e-137 491.9 348 72.7
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.5e-134 482.3 321 71.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.3e-133 480.3 348 71.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.1e-130 470.7 325 71.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.6e-129 466.1 293 73.0
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.3e-125 453.8 338 68.3
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-125 453.0 257 81.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 4.8e-123 445.3 380 62.1
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.4e-122 443.0 241 86.3
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 6.9e-122 441.4 289 76.5
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 9.0e-122 441.0 381 56.7
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.8e-121 438.3 292 66.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.3e-115 420.6 325 61.5
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 8.2e-115 417.9 345 59.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.8e-114 416.8 325 67.1
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.2e-111 406.0 267 76.0
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 5.7e-108 395.2 318 58.8
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.5e-105 387.1 380 55.5
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 5.9e-105 385.2 234 74.8
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.2e-103 379.4 296 60.1
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.3e-100 369.4 249 72.7
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.6e-94 350.5 235 76.2
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.6e-94 349.4 196 83.2
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-92 344.0 234 69.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.8e-91 339.7 196 80.6
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.7e-88 330.5 226 73.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-74 284.6 322 48.4
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.4e-74 283.5 211 70.1
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 7.0e-74 282.0 344 45.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 9.5e-71 271.6 215 65.1
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.8e-69 267.3 308 46.4
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 5.2e-69 265.8 301 44.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 6.8e-69 265.4 299 47.5
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.2e-53 212.6 153 70.6
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.2e-50 201.8 112 81.2
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 2.0e-44 184.1 182 57.1
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.9e-42 177.6 335 37.3
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-37 161.0 94 84.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 3.1e-37 160.2 92 84.8
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 4.0e-37 159.8 131 64.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.5e-36 157.9 94 81.9
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-36 157.1 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 3.4e-36 156.8 92 82.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 2.2e-35 154.1 131 62.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.5e-33 146.7 97 80.4
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 7.6e-28 129.0 66 89.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.1e-26 125.2 77 75.3
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 3.2e-26 123.6 74 78.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 6.6e-24 115.9 133 50.4
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 8.7e-24 115.5 92 67.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.5e-23 114.8 320 27.8
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.6e-22 111.3 63 79.4
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.8e-22 110.5 117 52.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 3.5e-17 93.6 57 73.7
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-16 91.7 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 5.1e-16 89.7 264 28.8
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-15 87.4 100 49.0
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.4e-12 77.0 45 80.0
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 7.6e-12 75.9 41 82.9
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 3.2e-10 70.5 45 68.9
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 6.0e-09 66.2 42 71.4
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 6.0e-09 66.2 42 71.4
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 6.7e-08 62.8 33 90.9
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 4.8e-06 56.6 39 66.7


User provided reference genes

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