Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 0.0e+00 1481.5 819 100.0
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.4e-307 1058.1 823 70.8
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.8e-303 1044.6 827 69.3
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.0e-299 1032.3 835 69.2
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.7e-298 1029.2 822 69.1
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.6e-293 1011.5 828 67.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.4e-289 999.6 851 68.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.6e-288 996.1 825 67.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.0e-287 991.1 826 65.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.5e-286 989.6 845 65.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 8.0e-285 983.8 818 66.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-282 975.7 819 65.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 9.2e-281 970.3 828 65.5
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-280 967.2 829 64.1
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.5e-278 962.2 825 66.3
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 2.3e-276 955.7 836 64.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 3.1e-276 955.3 831 64.0
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-274 949.1 829 62.7
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.7e-274 948.3 833 64.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 8.3e-274 947.2 822 63.1
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.1e-273 946.8 830 64.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.1e-273 946.8 834 64.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.4e-273 946.4 829 64.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 5.4e-273 944.5 828 63.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 9.2e-273 943.7 827 63.0
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 4.6e-272 941.4 828 63.8
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.3e-270 934.9 832 63.2
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 5.6e-270 934.5 836 62.3
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 7.3e-270 934.1 816 64.7
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.8e-269 932.2 827 61.5
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 4.0e-268 928.3 834 63.3
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.4e-267 925.2 834 61.8
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.3e-266 923.3 832 62.1
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.9e-266 922.2 829 61.4
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.4e-265 919.8 826 61.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 3.2e-265 918.7 824 62.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 5.4e-265 917.9 830 61.1
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.1e-264 916.0 818 61.5
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.7e-264 915.6 826 60.9
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 6.0e-264 914.4 829 60.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.3e-263 913.3 825 63.8
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.7e-263 912.9 826 60.5
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.5e-262 909.8 826 60.3
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.5e-262 909.1 828 60.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 5.6e-262 907.9 829 61.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.3e-262 907.5 831 61.3
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.1e-261 906.0 826 60.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.6e-261 905.2 827 60.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 4.8e-261 904.8 832 61.3
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 4.8e-261 904.8 828 59.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 6.2e-261 904.4 834 61.0
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.4e-260 903.3 831 59.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.0e-259 899.4 835 61.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.0e-259 899.4 829 59.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.4e-259 898.7 832 59.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.9e-258 895.6 825 61.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 3.8e-258 895.2 830 60.4
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.4e-258 894.4 816 63.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.2e-256 890.2 829 59.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.6e-256 888.3 829 59.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.0e-255 887.1 826 60.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.5e-254 883.2 834 58.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 7.3e-254 880.9 915 55.8
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.3e-250 870.2 826 60.0
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 4.9e-250 868.2 833 58.6
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.4e-249 865.9 834 60.2
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.5e-248 862.1 824 62.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.0e-247 860.5 834 59.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 4.3e-246 855.1 825 59.2
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 7.4e-246 854.4 827 61.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.0e-242 844.0 837 59.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.2e-241 839.0 829 58.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 6.5e-234 814.7 842 56.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 9.3e-233 810.8 776 58.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.8e-231 806.6 836 55.9
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.9e-231 805.4 866 54.5
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.3e-230 802.0 818 54.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.5e-226 787.7 820 53.9
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.5e-225 786.2 812 56.0
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.5e-225 786.2 812 56.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 5.5e-225 785.0 812 55.9
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 6.1e-224 781.6 849 53.0
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.0e-223 780.8 813 54.4
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.0e-222 776.5 821 55.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.3e-222 775.4 812 55.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.7e-222 775.0 847 52.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.3e-221 773.9 832 52.3
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-221 772.7 809 55.3
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.8e-221 772.7 809 55.3
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.7e-218 763.5 829 52.2
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 7.9e-216 754.6 811 53.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 6.7e-215 751.5 831 53.3
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 4.4e-214 748.8 820 54.1
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 9.7e-206 721.1 830 49.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.6e-203 713.0 680 58.2
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.2e-202 709.9 824 50.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.4e-198 696.0 802 50.4
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 7.2e-193 678.3 688 55.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 4.2e-185 652.5 832 46.6
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.8e-184 649.8 595 60.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 5.7e-182 642.1 595 61.8
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.8e-182 641.3 602 62.0
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.3e-177 625.9 550 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.5e-155 553.1 858 41.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-151 541.2 449 67.3
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 9.3e-140 501.9 484 60.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 4.3e-137 493.0 828 43.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 7.4e-137 492.3 872 41.3
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.3e-136 491.5 782 42.2
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.0e-125 455.3 375 66.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.3e-122 444.1 446 59.6
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.0e-114 418.7 297 70.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.3e-113 413.3 386 58.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.9e-106 390.2 943 31.9
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.7e-99 367.5 410 51.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.3e-98 364.4 287 68.3
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 9.7e-97 359.0 323 63.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 4.1e-87 327.0 445 44.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.2e-81 308.9 194 77.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.9e-76 291.6 279 62.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.8e-74 282.7 328 47.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.6e-73 281.2 239 66.1
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 5.7e-73 280.0 237 65.0
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 8.3e-72 276.2 227 62.6
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 7.3e-60 236.5 879 29.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.2e-58 230.3 267 53.9
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 7.0e-55 219.9 164 70.1
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 4.6e-54 217.2 195 61.5
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.3e-53 214.9 211 55.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.1e-43 179.9 143 67.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-42 179.1 184 57.1
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.8e-42 178.7 205 51.7
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.6e-41 174.9 151 62.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 9.6e-36 156.4 154 59.1
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.8e-35 154.8 106 74.5
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.4e-34 152.5 170 53.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 2.9e-32 144.8 589 26.3
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.9e-32 144.1 169 50.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.4e-26 125.9 830 25.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.8e-25 120.6 274 36.1
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.7e-24 119.0 112 59.8
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 8.4e-24 116.7 78 65.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-23 116.3 96 66.7
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.9e-23 115.5 276 35.1
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 2.4e-23 115.2 569 23.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 9.3e-23 113.2 283 34.6
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 5.1e-21 107.5 102 54.9
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.4e-20 103.6 62 75.8
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.7e-14 85.1 50 80.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.0e-13 83.2 105 50.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.3e-11 76.3 83 50.6
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.6e-11 75.9 67 65.7
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 8.1e-11 73.6 70 64.3
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.4e-10 72.8 65 56.9
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-10 72.0 54 64.8
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 4.0e-10 71.2 121 38.8
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 4.5e-09 67.8 63 47.6
Actinidia37122 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.7e-06 58.5 164 34.8


User provided reference genes

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