Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 0.0e+00 2046.6 1015 100.0
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1165.6 1004 57.9
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 0.0e+00 1095.5 1002 55.6
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 1086.6 981 55.5
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1086.6 1011 55.0
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 1084.3 1005 54.6
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.4e-310 1069.7 981 55.0
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 5.8e-309 1064.3 1008 55.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.7e-308 1062.8 1004 53.9
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-303 1046.6 1006 53.4
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 6.2e-303 1044.3 981 54.5
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 4.9e-300 1034.6 1009 52.4
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 1.3e-297 1026.5 1023 51.7
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 6.9e-294 1014.2 1019 51.9
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 2.9e-292 1008.8 1034 50.5
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 7.1e-291 1004.2 995 52.3
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 7.9e-290 1000.7 1026 50.7
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.9e-289 998.4 1004 52.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 5.6e-288 994.6 1000 52.2
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 7.4e-288 994.2 986 51.7
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 4.5e-285 984.9 1003 51.7
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 9.3e-283 977.2 1011 51.6
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 2.8e-271 939.1 1000 48.7
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.5e-269 933.3 1014 49.2
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.1e-267 927.2 1011 47.6
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.7e-266 922.5 1021 47.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.8e-265 919.8 1010 47.8
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.5e-264 916.8 1003 48.0
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.4e-257 893.6 1015 47.4
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 5.7e-256 888.3 1004 46.1
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 8.2e-255 884.4 1004 48.0
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 5.3e-254 881.7 999 46.3
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 9.1e-254 880.9 939 48.3
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 3.5e-253 879.0 1017 45.7
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.1e-251 874.0 1013 45.6
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.2e-250 870.5 994 47.0
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 9.7e-248 860.9 1003 45.2
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 9.7e-248 860.9 1015 44.6
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.1e-246 857.4 1000 46.8
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 5.3e-246 855.1 1015 42.4
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.6e-245 853.6 1010 45.0
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 5.9e-245 851.7 996 46.1
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.3e-244 850.5 1003 45.3
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 3.8e-244 849.0 1004 45.4
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.6e-242 843.6 1014 43.1
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 6.1e-242 841.6 1003 43.3
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 6.1e-242 841.6 1020 44.3
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 8.0e-242 841.3 1006 44.6
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.0e-241 840.9 1003 44.6
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.2e-239 833.2 1003 44.2
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.2e-239 833.2 1002 44.9
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.2e-239 833.2 1024 44.0
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.8e-239 832.8 1010 44.7
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 3.7e-239 832.4 1127 43.0
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.8e-238 830.1 1015 44.6
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.1e-238 829.3 1020 43.6
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 4.1e-238 828.9 1024 43.4
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 4.5e-237 825.5 1003 43.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.3e-236 823.9 1003 43.7
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 8.6e-236 821.2 1013 44.2
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 3.3e-235 819.3 898 48.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 7.2e-235 818.1 1010 44.5
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.8e-233 813.5 1014 44.8
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-232 810.4 932 45.3
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.4e-230 803.1 838 48.0
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 1.4e-225 787.3 1029 43.4
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 4.9e-215 752.3 747 51.7
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 7.1e-214 748.4 931 43.6
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 8.9e-209 731.5 929 43.2
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 1.2e-205 721.1 867 42.0
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 3.5e-197 693.0 1004 37.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 7.8e-197 691.8 1003 39.2
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 3.3e-195 686.4 861 43.7
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 5.3e-193 679.1 820 45.2
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 2.7e-189 666.8 804 46.0
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 4.6e-189 666.0 749 44.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.0e-189 665.6 1012 38.7
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 5.1e-188 662.5 1074 38.7
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.5e-187 661.0 1002 38.3
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 9.6e-187 658.3 751 45.7
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 1.6e-178 630.9 843 42.3
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 5.8e-176 622.5 572 54.7
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 6.5e-175 619.0 720 45.3
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 2.1e-173 614.0 716 44.3
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.5e-168 597.8 1016 37.2
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 3.4e-152 543.5 1014 34.5
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 5.9e-152 542.7 793 39.5
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.2e-142 510.0 576 47.9
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 9.8e-131 472.2 438 56.2
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 5.4e-121 439.9 748 37.2
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 6.6e-119 433.0 872 34.5
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.8e-116 422.9 419 50.4
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 2.2e-98 364.8 1001 27.9
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.8e-83 313.5 482 42.1
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 2.9e-82 311.2 1005 26.5
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 5.6e-78 297.0 258 59.7
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.2e-77 293.5 371 45.3
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 9.9e-75 286.2 1066 25.2
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 7.6e-67 260.0 311 39.2
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 6.4e-66 256.9 437 36.2
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 5.5e-65 253.8 198 55.6
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 5.1e-63 247.3 517 33.7
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 1.3e-61 242.7 235 52.3
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.1e-60 238.0 195 55.9
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.7e-48 198.4 226 50.0
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 2.7e-48 198.4 433 30.9
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.3e-46 191.0 234 44.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 1.1e-44 186.4 140 61.4
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.8e-42 177.9 181 47.0
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.1e-39 167.5 193 46.6
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 5.9e-35 154.1 140 47.9
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 8.5e-34 150.2 159 44.0
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.0e-31 143.3 146 46.6
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 6.3e-29 134.0 148 50.7
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 1.1e-28 133.3 111 57.7
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.4e-28 132.1 148 50.0
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 2.2e-26 125.6 251 31.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 9.7e-22 110.2 155 38.7
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 3.5e-19 101.7 75 58.7
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.8e-15 89.4 94 52.1
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 2.3e-15 89.0 105 49.5
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.0e-15 88.6 95 40.0
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 8.3e-13 80.5 126 38.1
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 9.1e-12 77.0 155 31.6
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 5.2e-07 61.2 80 47.5
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 9.8e-06 57.0 47 55.3


User provided reference genes

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