Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 5.1e-207 724.2 360 100.0
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.3e-138 496.9 340 68.8
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 9.4e-137 490.7 340 68.5
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.6e-136 490.0 342 68.1
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.7e-136 489.2 340 68.5
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.8e-135 486.5 340 67.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 2.2e-133 479.6 339 69.0
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 2.8e-133 479.2 364 66.2
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 3.1e-132 475.7 353 65.2
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 3.1e-132 475.7 338 68.3
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 3.1e-132 475.7 361 66.2
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 4.1e-132 475.3 330 69.1
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.6e-131 473.4 330 68.8
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 5.9e-131 471.5 367 65.1
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 5.9e-131 471.5 331 67.7
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.5e-129 466.8 359 65.5
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 7.2e-129 464.5 357 63.6
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-128 463.4 364 64.0
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 4.7e-128 461.8 353 64.9
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 6.1e-128 461.5 356 65.7
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 8.0e-128 461.1 331 67.1
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.4e-127 460.3 361 64.0
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 1.8e-127 459.9 367 61.9
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 1.8e-127 459.9 359 63.2
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 6.8e-127 458.0 336 64.9
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.6e-126 456.1 341 66.0
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 9.8e-126 454.1 359 62.4
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.1e-124 450.7 328 64.6
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.4e-124 450.3 320 66.2
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.4e-124 450.3 320 66.6
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.4e-124 449.5 328 65.2
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 3.1e-124 449.1 338 63.9
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 4.1e-124 448.7 324 66.7
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 4.1e-124 448.7 358 63.1
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.0e-123 446.4 346 61.8
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 2.0e-123 446.4 368 59.5
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 2.7e-123 446.0 323 66.9
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 7.7e-123 444.5 331 64.7
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 7.7e-123 444.5 337 65.6
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.8e-122 442.2 322 65.5
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 8.5e-122 441.0 333 65.8
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 2.5e-121 439.5 342 63.7
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 6.1e-120 434.9 342 63.2
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 4.0e-119 432.2 331 64.7
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 5.2e-119 431.8 354 60.7
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 8.8e-119 431.0 359 60.4
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 7.5e-118 427.9 325 65.5
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 9.8e-118 427.6 340 62.1
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.3e-117 427.2 329 63.8
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.7e-117 426.8 349 60.5
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.7e-117 426.8 329 64.4
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 2.2e-117 426.4 363 58.4
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 3.7e-117 425.6 355 60.8
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.8e-116 423.3 332 62.3
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 2.4e-116 422.9 312 65.1
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 3.5e-115 419.1 343 61.8
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 5.9e-115 418.3 299 67.6
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 7.7e-115 417.9 332 61.7
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.3e-114 417.2 289 70.2
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 2.3e-114 416.4 335 61.5
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 3.8e-114 415.6 370 57.3
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.9e-113 413.3 359 56.5
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.3e-113 412.5 368 55.2
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.3e-113 412.5 346 59.5
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 3.3e-113 412.5 346 59.8
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 5.5e-113 411.8 367 57.5
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 5.5e-113 411.8 328 59.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 7.2e-113 411.4 322 60.6
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 7.2e-113 411.4 334 61.4
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 2.1e-112 409.8 328 59.1
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 6.1e-112 408.3 339 58.4
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.0e-111 407.5 346 58.7
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.0e-111 407.5 341 59.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 1.4e-111 407.1 344 60.2
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.8e-111 406.8 340 59.4
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 1.8e-111 406.8 290 69.0
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 6.8e-111 404.8 356 58.1
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.5e-110 403.7 376 55.6
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 2.0e-110 403.3 346 58.4
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 7.5e-110 401.4 350 58.3
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 9.8e-110 401.0 335 58.5
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 1.3e-109 400.6 333 58.6
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.7e-109 400.2 348 59.2
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.2e-107 394.0 335 58.8
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 4.6e-107 392.1 356 54.2
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 6.6e-106 388.3 285 65.3
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 8.6e-106 387.9 367 57.2
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.9e-105 386.7 326 59.8
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 1.0e-103 380.9 352 54.5
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 3.1e-103 379.4 323 58.2
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 6.4e-101 371.7 253 70.4
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.1e-100 370.9 341 56.6
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 1.4e-100 370.5 364 52.7
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.2e-96 357.5 258 69.0
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 2.9e-93 346.3 326 55.2
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 2.3e-90 336.7 250 62.8
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 6.2e-88 328.6 281 54.4
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 5.2e-87 325.5 367 50.7
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 4.9e-85 318.9 330 49.7
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 6.2e-80 302.0 258 60.5
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 8.9e-79 298.1 232 65.1
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 2.4e-76 290.0 247 59.1
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 6.0e-75 285.4 304 49.7
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.3e-74 284.3 465 37.0
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.1e-73 281.2 308 51.6
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 4.3e-73 279.3 209 65.6
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.3e-72 277.7 306 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 2.8e-72 276.6 322 46.6
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.0e-70 270.4 296 51.0
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.4e-68 264.2 226 64.2
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 7.9e-67 258.5 210 62.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.9e-61 239.2 222 53.2
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.4e-55 221.1 359 37.6
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 2.9e-53 213.4 156 67.3
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.1e-50 202.6 154 66.2
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.8e-48 196.8 385 34.0
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 3.4e-46 189.9 124 71.0
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 3.8e-45 186.4 120 75.8
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.2e-43 181.4 170 58.2
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 1.8e-42 177.6 357 36.7
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 3.7e-40 169.9 125 61.6
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 1.2e-38 164.9 347 33.1
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 1.9e-36 157.5 109 71.6
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 4.6e-35 152.9 123 54.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.2e-27 128.3 85 68.2
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.5e-25 121.3 149 49.0
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 2.8e-24 117.1 122 50.0
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 6.1e-19 99.4 65 69.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.8e-18 97.8 61 73.8
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 6.1e-11 72.8 55 72.7
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 8.0e-11 72.4 119 38.7
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 2.3e-10 70.9 230 31.7


User provided reference genes

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