Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 0.0e+00 1400.2 728 100.0
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 2.9e-169 599.7 740 51.6
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 4.2e-168 595.9 740 50.7
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.0e-162 577.0 813 46.9
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.3e-156 557.8 743 47.8
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.2e-151 541.2 775 47.1
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 1.0e-150 538.1 753 46.7
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.0e-150 538.1 753 47.4
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.3e-149 533.1 765 46.5
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.4e-147 527.7 750 47.9
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.4e-147 526.9 751 46.5
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 7.7e-146 521.9 732 47.3
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 1.1e-144 518.1 765 46.1
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 1.5e-144 517.7 766 46.2
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.1e-143 513.8 748 45.9
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 8.0e-143 511.9 756 46.4
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.0e-142 510.0 748 45.7
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 8.2e-140 501.9 761 44.4
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.7e-137 494.2 717 45.7
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 8.5e-137 491.9 756 45.2
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 7.2e-136 488.8 760 44.5
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 1.4e-134 484.6 764 44.0
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 2.3e-134 483.8 745 45.5
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.1e-131 474.9 754 43.4
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 2.4e-131 473.8 756 44.4
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 7.7e-130 468.8 752 43.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.7e-129 467.6 759 43.2
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 3.8e-129 466.5 764 44.0
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 3.3e-128 463.4 764 43.8
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 7.2e-128 462.2 765 45.0
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 2.1e-127 460.7 755 42.8
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.3e-126 457.2 719 43.5
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.3e-126 457.2 746 43.3
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 3.7e-124 449.9 741 43.5
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 4.9e-124 449.5 895 37.8
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 4.1e-123 446.4 719 43.0
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 5.4e-123 446.0 751 42.2
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.2e-122 444.9 749 42.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 4.5e-122 443.0 765 43.4
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 5.9e-122 442.6 741 41.7
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 6.6e-121 439.1 786 41.9
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 2.5e-120 437.2 921 35.8
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 2.5e-120 437.2 751 41.7
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.3e-120 436.8 733 42.2
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.0e-118 431.8 749 41.3
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.8e-118 431.0 763 42.3
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 2.2e-116 424.1 768 41.0
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 6.8e-110 402.5 757 41.0
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 6.8e-110 402.5 793 40.5
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.0e-109 401.0 736 41.0
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 3.4e-109 400.2 778 40.5
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 4.4e-109 399.8 751 41.0
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 7.5e-109 399.1 752 41.1
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.2e-108 397.5 762 40.8
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.6e-106 391.3 768 41.0
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 2.0e-106 391.0 825 38.5
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 4.6e-106 389.8 750 41.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 6.6e-105 386.0 764 40.3
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 7.3e-104 382.5 781 37.3
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.2e-103 381.7 757 39.2
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 2.8e-103 380.6 749 39.7
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.4e-102 378.3 764 40.2
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 3.1e-102 377.1 758 40.5
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.3e-100 371.7 785 39.0
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 1.3e-100 371.7 784 39.3
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.9e-99 367.9 745 40.0
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.3e-96 357.1 725 38.3
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.2e-95 355.1 748 38.2
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.4e-94 351.7 767 38.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.8e-94 351.3 763 37.0
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 8.9e-94 349.0 728 38.6
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 2.2e-92 344.4 770 35.2
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 2.9e-92 344.0 729 37.4
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 9.0e-86 322.4 697 37.6
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 2.0e-85 321.2 736 35.6
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 7.3e-80 302.8 740 35.8
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 6.2e-79 299.7 667 36.4
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 3.1e-78 297.4 760 34.7
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 6.9e-78 296.2 759 34.1
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 9.0e-78 295.8 760 34.3
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 5.8e-77 293.1 765 34.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 2.2e-76 291.2 760 34.6
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.1e-75 288.9 775 33.7
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 1.4e-75 288.5 751 35.2
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.2e-75 287.3 768 33.7
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 7.1e-75 286.2 720 34.9
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 6.0e-74 283.1 745 36.4
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 3.0e-73 280.8 783 35.0
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 6.7e-73 279.6 767 33.8
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 2.1e-71 274.6 702 32.3
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 4.0e-70 270.4 704 33.9
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 9.9e-69 265.8 806 33.5
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.3e-68 265.4 701 32.8
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 3.8e-68 263.8 699 34.0
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 4.9e-68 263.5 750 33.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 3.5e-66 257.3 691 32.9
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 6.0e-66 256.5 689 32.9
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.0e-65 254.2 783 31.7
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.2e-63 246.5 683 32.5
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 4.9e-60 236.9 783 34.1
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 8.4e-60 236.1 765 30.8
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 1.9e-59 235.0 307 48.9
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 2.3e-57 228.0 781 32.5
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 2.3e-57 228.0 730 30.3
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 3.9e-57 227.3 722 32.7
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.9e-56 224.9 172 66.9
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 3.3e-56 224.2 786 32.4
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.4e-54 218.8 661 32.7
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.6e-53 214.5 739 33.2
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 2.2e-52 211.5 778 30.8
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.9e-52 211.1 780 31.4
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.9e-51 208.4 703 31.4
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 7.2e-51 206.5 796 30.7
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 4.6e-50 203.8 759 29.8
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 4.6e-50 203.8 684 31.4
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 3.9e-49 200.7 788 32.1
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 8.8e-49 199.5 770 32.1
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.5e-48 198.7 772 32.1
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 2.0e-48 198.4 558 34.9
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 4.3e-48 197.2 771 32.6
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 4.3e-48 197.2 775 31.0
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 4.3e-48 197.2 775 31.0
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 5.7e-48 196.8 778 32.5
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 3.1e-46 191.0 783 32.8
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 3.1e-46 191.0 783 32.8
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 5.3e-46 190.3 769 32.0
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 3.6e-42 177.6 125 68.8
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 1.7e-36 158.7 707 28.7
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 1.5e-27 129.0 858 27.6
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.2e-24 119.4 757 25.1
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 6.3e-23 113.6 95 61.1
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 3.5e-21 107.8 823 24.3
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 5.2e-17 94.0 219 31.5
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.0e-12 79.7 115 40.9
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 1.3e-12 79.3 773 23.4
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 5.2e-09 67.4 64 53.1
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 6.8e-09 67.0 187 31.0
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 8.3e-07 60.1 219 35.2


User provided reference genes

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