Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 0.0e+00 1447.6 748 100.0
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.7e-130 470.3 799 46.2
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 8.5e-124 448.7 791 44.5
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 8.5e-124 448.7 794 42.3
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.4e-118 431.4 776 42.8
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.2e-117 428.3 598 46.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.9e-115 421.0 768 41.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 4.2e-115 419.9 783 41.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.2e-114 418.3 782 41.6
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.8e-111 406.4 723 42.0
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.8e-105 387.9 784 41.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.3e-105 387.5 785 41.0
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.8e-102 377.9 733 39.4
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.4e-102 377.5 798 38.5
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.4e-102 376.3 823 38.9
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.7e-101 374.0 712 40.3
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.7e-101 374.0 649 42.4
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 4.5e-101 373.2 684 41.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.3e-100 371.7 772 38.0
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.7e-100 371.3 798 39.5
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.5e-99 368.2 799 37.3
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 2.5e-99 367.5 785 38.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 7.3e-99 365.9 798 39.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.2e-98 365.2 706 42.1
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 2.1e-98 364.4 830 37.1
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.8e-97 361.3 798 39.0
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.8e-97 359.4 704 39.6
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 2.6e-96 357.5 735 39.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 4.4e-96 356.7 807 37.9
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.7e-95 354.8 649 42.4
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.2e-95 354.4 811 38.0
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.7e-95 353.6 721 39.5
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.9e-95 353.2 710 41.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 8.3e-95 352.4 710 39.4
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.1e-94 352.1 773 38.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.4e-94 350.9 698 40.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.2e-93 348.6 796 37.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.3e-92 344.4 710 39.6
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 6.6e-92 342.8 563 45.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 5.6e-91 339.7 711 40.4
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.1e-90 337.8 774 38.0
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.6e-90 337.0 654 41.9
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 1.4e-89 335.1 706 39.2
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.9e-89 332.4 772 37.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.3e-87 328.6 792 37.2
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.4e-86 324.3 774 36.3
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.3e-84 318.5 731 38.7
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 6.6e-84 316.2 765 36.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 5.6e-83 313.2 679 39.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.6e-82 311.6 702 38.2
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 5.2e-81 306.6 616 41.4
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.2e-81 306.6 616 41.4
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.2e-80 305.4 613 42.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.5e-80 305.1 804 36.6
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 2.6e-80 304.3 727 38.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 7.5e-80 302.8 795 35.8
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.9e-79 300.8 614 41.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 8.3e-79 299.3 708 37.4
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.9e-78 298.1 719 35.3
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.0e-76 292.4 538 41.6
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.3e-76 291.2 635 39.5
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.3e-75 287.3 575 38.6
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.3e-75 287.0 575 38.6
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.3e-75 287.0 575 38.6
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 4.3e-75 287.0 577 38.8
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 9.5e-75 285.8 591 38.7
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.5e-72 278.5 720 33.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.0e-72 278.1 577 37.8
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 9.9e-72 275.8 800 33.8
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.4e-70 271.2 731 35.2
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 7.8e-69 266.2 723 34.0
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.8e-66 257.7 502 42.0
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.6e-66 257.3 430 42.1
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-65 255.4 698 34.8
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.4e-65 255.4 709 35.5
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 4.0e-65 253.8 516 38.0
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.0e-65 253.8 714 35.4
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.6e-64 251.1 567 37.4
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 4.9e-63 246.9 702 34.2
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.2e-62 244.2 744 32.7
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.3e-60 238.0 759 32.9
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.0e-60 237.7 426 39.9
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.3e-58 232.3 427 39.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.4e-57 228.0 443 37.7
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.0e-56 224.9 693 32.9
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.3e-55 222.2 387 40.3
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.9e-55 220.3 561 36.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.1e-54 219.2 525 35.4
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.4e-54 218.8 562 33.6
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.4e-54 218.0 589 34.8
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 2.4e-54 218.0 677 33.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 9.3e-54 216.1 533 34.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.8e-52 211.8 547 34.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.8e-52 211.8 700 30.4
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.5e-51 208.0 694 31.8
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 3.3e-51 207.6 582 32.8
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.3e-51 207.6 544 35.8
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.6e-51 206.8 707 32.2
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 7.4e-51 206.5 624 32.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.3e-50 205.7 341 39.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 5.3e-49 200.3 539 34.5
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 5.8e-48 196.8 500 36.0
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 7.6e-48 196.4 459 36.4
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.7e-47 195.3 654 31.2
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.9e-47 194.5 473 35.7
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 9.3e-46 189.5 502 33.1
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 4.6e-45 187.2 448 34.4
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.1e-44 183.7 591 31.1
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 8.7e-44 183.0 627 30.8
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.9e-43 181.8 526 32.9
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.1e-42 178.3 526 33.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 5.3e-41 173.7 459 34.4
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 2.9e-39 167.9 375 36.8
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.9e-38 165.2 739 28.8
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 5.5e-38 163.7 460 33.7
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-36 159.1 442 34.2
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 5.1e-36 157.1 537 32.6
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 8.7e-36 156.4 464 34.1
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 8.7e-36 156.4 410 36.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.5e-35 155.6 410 34.1
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.3e-34 152.5 463 37.1
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.6e-34 152.1 407 35.6
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-34 152.1 405 34.3
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.1e-33 149.4 441 34.9
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.4e-33 149.1 478 33.3
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 4.1e-33 147.5 428 32.5
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.1e-33 147.5 284 35.2
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.3e-33 147.1 451 34.8
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.3e-33 147.1 466 34.5
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 9.0e-33 146.4 409 32.3
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 9.0e-33 146.4 409 32.3
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-32 145.2 398 32.4
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 2.6e-32 144.8 339 34.8
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-31 142.5 390 33.3
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 2.9e-31 141.4 496 33.1
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 6.5e-31 140.2 496 33.1
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 6.5e-31 140.2 496 33.1
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 8.5e-31 139.8 409 33.0
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-30 139.4 430 32.1
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.6e-29 135.6 430 32.1
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-29 135.2 462 31.4
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.6e-29 134.0 439 33.5
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 4.3e-27 127.5 425 30.1
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 5.7e-27 127.1 409 30.3
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 5.7e-27 127.1 409 30.3
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 9.7e-27 126.3 412 30.3
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.3e-26 125.9 430 30.2
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-26 125.9 417 30.7
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-26 125.6 412 30.8
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.2e-26 125.2 671 26.1
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.8e-26 124.8 357 33.3
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-25 122.1 579 28.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 4.1e-25 120.9 579 28.8
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 9.1e-25 119.8 497 29.4
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 4.5e-24 117.5 588 27.6
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 4.2e-22 110.9 501 26.9
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 5.1e-20 104.0 274 35.4
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 2.6e-19 101.7 295 33.9
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.1e-17 96.3 361 30.7
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 7.7e-16 90.1 318 30.8
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.3e-15 89.4 225 35.1
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-13 82.4 397 26.4
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.6e-13 82.4 159 36.5
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 6.7e-12 77.0 172 33.7
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 5.7e-11 73.9 212 31.1
CDE03G0301 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.2e-10 70.1 269 28.3
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 1.8e-09 68.9 389 24.7
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.3e-09 67.4 84 45.2
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 7.0e-09 67.0 307 25.7
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.0e-08 65.5 267 27.7
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 7.7e-08 63.5 51 51.0
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 1.0e-07 63.2 51 51.0
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 6.5e-07 60.5 57 45.6
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 6.5e-07 60.5 382 22.8
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 1.1e-06 59.7 49 53.1
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.1e-06 59.7 288 25.3
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.1e-06 59.7 335 24.5
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 1.5e-06 59.3 69 40.6
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 1.9e-06 58.9 71 40.8
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 2.5e-06 58.5 68 39.7
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 3.2e-06 58.2 53 45.3
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 4.2e-06 57.8 157 30.6
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 7.2e-06 57.0 57 40.4
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 9.4e-06 56.6 154 29.2


User provided reference genes

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