Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 0.0e+00 1106.7 566 100.0
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.5e-96 357.8 579 44.0
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-95 354.0 550 44.9
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 3.5e-85 320.1 577 40.9
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 7.5e-80 302.4 584 39.2
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 4.1e-78 296.6 574 39.0
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 6.5e-76 289.3 575 38.4
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.5e-75 287.3 575 37.7
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 9.4e-75 285.4 575 37.9
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.0e-73 280.4 588 37.8
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.2e-72 278.5 583 37.4
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.7e-71 274.6 585 36.9
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.4e-70 271.6 590 37.1
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.2e-69 268.5 535 38.5
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.5e-69 266.9 523 38.4
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.7e-68 264.6 574 36.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 6.1e-66 256.1 588 37.4
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.5e-64 251.5 588 34.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.6e-64 250.8 592 34.1
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.7e-64 249.6 537 38.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-63 248.4 574 35.0
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.9e-63 246.5 580 35.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 6.3e-63 246.1 588 33.8
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.4e-62 245.0 429 41.0
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 5.4e-62 243.0 580 35.5
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.7e-60 238.0 585 34.2
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 3.8e-60 236.9 576 34.9
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 3.3e-59 233.8 572 35.5
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 7.3e-59 232.6 582 32.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.1e-58 231.1 578 34.4
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.8e-58 230.7 572 35.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 8.0e-58 229.2 572 35.1
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 2.3e-57 227.6 585 36.6
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 3.0e-57 227.3 522 39.7
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 8.9e-57 225.7 580 32.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.2e-56 225.3 571 33.6
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.3e-55 221.9 563 36.1
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.3e-55 221.9 573 33.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 1.8e-54 218.0 474 36.7
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.2e-54 217.2 587 33.9
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 2.7e-53 214.2 570 33.7
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 5.9e-53 213.0 577 32.8
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.8e-53 212.6 590 34.6
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.5e-51 208.4 559 34.2
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.9e-51 208.0 598 33.3
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.9e-51 208.0 598 33.3
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 9.5e-51 205.7 590 33.9
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.0e-49 202.2 578 30.3
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.0e-49 202.2 585 33.7
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.9e-49 199.1 585 33.7
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.9e-49 199.1 546 33.0
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.5e-48 198.4 590 33.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 2.9e-47 194.1 582 31.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.4e-47 193.0 581 33.4
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.1e-46 192.2 329 41.9
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.4e-46 189.9 378 38.6
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.6e-45 188.3 560 33.9
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.3e-44 184.5 500 33.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.3e-43 180.3 317 43.8
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 3.1e-41 174.1 603 31.3
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 5.8e-40 169.9 303 42.6
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.4e-38 164.5 474 33.8
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.0e-36 157.5 353 38.8
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 8.6e-36 156.0 488 33.8
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 8.6e-36 156.0 330 37.9
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.3e-35 154.1 303 41.3
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.3e-33 147.9 302 40.4
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 7.6e-32 142.9 553 29.7
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.4e-31 139.8 558 29.4
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 6.4e-31 139.8 558 29.4
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.6e-29 135.2 553 29.8
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.9e-27 128.3 313 37.4
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 5.6e-27 126.7 456 30.0
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 9.6e-27 125.9 314 36.9
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.6e-24 117.9 277 37.5
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 5.8e-24 116.7 471 28.2
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-23 115.5 345 34.2
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 8.4e-23 112.8 553 26.8
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.8e-21 106.3 268 35.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 5.1e-20 103.6 306 31.7
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 2.5e-19 101.3 285 33.0
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 2.5e-19 101.3 285 33.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-18 98.6 284 32.4
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-18 98.6 284 32.4
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-18 98.2 285 32.3
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.6e-18 97.4 282 31.9
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 4.8e-18 97.1 288 31.6
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 4.8e-18 97.1 190 37.4
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.2e-18 96.7 282 31.9
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 6.2e-18 96.7 279 33.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-17 95.5 349 31.2
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-15 89.0 290 35.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.7e-15 88.6 303 30.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-14 85.9 292 32.2
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.1e-14 85.9 280 32.5
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 2.4e-14 84.7 271 33.6
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 7.1e-14 83.2 274 31.8
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.6e-13 82.0 290 36.9
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-13 82.0 284 33.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.6e-13 82.0 284 33.8
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 2.1e-13 81.6 292 33.2
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.1e-13 81.6 385 28.1
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 3.5e-13 80.9 293 33.4
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 3.5e-13 80.9 301 31.2
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.0e-12 79.3 288 32.6
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 8.7e-12 76.3 283 32.9
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.5e-11 75.5 271 32.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.1e-10 71.6 279 30.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 6.2e-10 70.1 63 52.4
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 8.1e-10 69.7 70 58.6
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-09 67.8 86 53.5
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 4.0e-09 67.4 99 49.5
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.0e-09 67.4 90 51.1
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 5.3e-09 67.0 255 31.0
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 6.9e-09 66.6 79 55.7
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 9.0e-09 66.2 100 49.0
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.2e-08 65.9 310 30.0
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.5e-08 65.5 554 24.2
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-08 65.5 162 35.8
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.5e-08 65.5 318 31.1
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.6e-08 64.7 58 58.6
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.5e-08 63.9 92 45.7
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 7.6e-08 63.2 287 28.6
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.3e-07 62.4 320 28.8
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-07 61.6 275 26.9
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 2.2e-07 61.6 275 26.9
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-06 59.3 271 28.0
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-06 57.8 62 56.5
unitig_749.g13705 Utricularia gibba HOM05D003788 ORTHO05D004633 3.2e-06 57.8 68 50.0
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-06 57.0 62 58.1
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 5.5e-06 57.0 62 56.5
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 5.5e-06 57.0 62 58.1
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 7.1e-06 56.6 63 54.0
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 7.1e-06 56.6 93 41.9
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 7.1e-06 56.6 93 41.9
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 7.1e-06 56.6 63 54.0
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 7.1e-06 56.6 93 41.9
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 7.1e-06 56.6 63 54.0


User provided reference genes

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