Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.7e-228 795.0 411 100.0
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.4e-189 665.6 411 83.0
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 3.3e-186 655.2 414 83.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 4.8e-185 651.4 411 82.5
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 6.2e-185 651.0 411 82.2
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 5.3e-184 647.9 406 82.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.7e-182 642.9 413 82.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.2e-182 642.5 411 82.2
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.9e-182 642.1 414 81.4
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 2.9e-182 642.1 423 79.7
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 6.4e-182 641.0 415 81.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.4e-182 641.0 410 80.5
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.1e-181 640.2 411 81.3
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.9e-181 639.4 416 81.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.2e-181 638.6 411 80.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.2e-181 638.3 413 81.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.6e-180 636.3 412 80.8
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-180 636.3 413 81.1
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-180 636.3 413 80.9
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.6e-180 636.3 413 81.1
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.6e-180 636.3 413 81.4
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 3.5e-180 635.2 420 80.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.7e-179 632.9 416 80.8
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.3e-179 632.5 411 80.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.3e-179 632.5 412 80.3
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.1e-178 630.2 413 79.7
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.9e-178 629.4 416 81.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.8e-177 625.5 414 80.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 4.8e-177 624.8 413 78.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.8e-177 624.8 407 79.6
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 8.1e-177 624.0 412 79.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.0e-176 621.7 411 80.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.2e-175 620.2 414 79.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.0e-175 619.4 412 77.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.4e-175 618.6 411 79.3
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 9.9e-175 617.1 409 78.7
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-174 616.7 415 78.3
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 2.2e-174 615.9 412 78.2
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.9e-174 615.5 413 78.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 3.8e-174 615.1 415 77.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.4e-173 612.5 412 77.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.2e-173 612.1 412 77.4
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 7.1e-173 610.9 409 77.3
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.2e-172 610.1 413 78.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.6e-172 609.8 417 77.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.7e-172 609.0 417 77.5
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.5e-172 608.6 415 75.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 4.6e-172 608.2 413 78.9
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.6e-172 608.2 415 78.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 4.6e-172 608.2 412 76.0
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.3e-171 606.7 420 76.0
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.3e-171 605.9 412 76.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.0e-171 605.5 412 76.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 3.0e-171 605.5 414 78.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 3.9e-171 605.1 450 74.4
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 6.7e-171 604.4 431 74.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 6.7e-171 604.4 411 76.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 8.7e-171 604.0 409 77.5
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.1e-170 603.6 412 76.5
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.9e-170 602.8 415 77.6
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 2.5e-170 602.4 415 75.7
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 3.3e-170 602.1 411 75.7
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 3.3e-170 602.1 412 76.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.3e-170 602.1 415 76.9
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-170 601.3 413 75.8
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.3e-169 600.1 416 75.7
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.3e-169 600.1 426 75.8
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-169 599.7 413 75.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.8e-169 599.0 411 77.1
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.7e-169 598.6 416 75.7
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 4.8e-169 598.2 410 77.8
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-168 597.0 413 75.1
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.8e-168 596.3 412 75.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 3.4e-167 592.0 414 74.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 4.5e-167 591.7 433 73.2
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.7e-166 589.7 411 75.2
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 4.9e-166 588.2 412 74.5
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 3.2e-165 585.5 413 75.5
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 4.2e-165 585.1 361 85.0
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.2e-164 583.6 412 73.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.2e-164 583.6 413 75.1
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.6e-164 583.2 412 73.5
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.7e-164 582.4 424 73.8
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 73.5
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 6.0e-164 581.3 420 73.1
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.0e-163 580.5 414 73.9
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.0e-163 580.5 414 73.4
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-163 579.7 424 73.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 3.0e-163 578.9 421 73.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.7e-163 577.4 413 73.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.3e-162 575.5 425 70.6
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-161 573.2 444 70.5
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 6.2e-161 571.2 415 73.5
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 8.2e-161 570.9 444 70.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.8e-160 569.7 419 73.0
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.9e-157 559.7 391 73.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.9e-157 559.7 410 71.7
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.5e-157 559.3 410 72.2
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.0e-155 553.9 339 85.0
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.8e-152 543.1 414 72.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.7e-150 536.6 363 77.1
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.7e-150 536.6 363 77.1
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.1e-149 533.9 348 78.4
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.2e-149 532.3 417 68.8
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.6e-148 528.5 479 64.3
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.6e-148 528.5 479 64.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.9e-147 525.4 356 77.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 9.1e-144 514.2 355 76.6
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.2e-143 513.8 317 82.3
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 7.2e-141 504.6 417 66.7
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.3e-134 483.8 413 64.6
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.5e-134 481.1 419 61.3
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.3e-129 467.2 426 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.0e-126 455.3 424 56.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 5.4e-120 435.3 405 61.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 7.5e-114 414.8 274 79.2
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 2.3e-110 403.3 383 56.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-109 401.0 324 69.1
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 5.9e-103 378.6 361 61.8
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.8e-99 367.1 336 61.0
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.3e-83 313.5 319 52.4
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 5.8e-82 308.9 418 43.8
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.3e-77 293.1 420 41.9
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.0e-75 286.2 246 63.8
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 7.6e-66 255.4 469 35.2
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.5e-63 246.5 464 37.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.8e-60 236.9 327 44.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-56 224.6 137 81.0
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.6e-55 221.1 126 84.1
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.5e-53 214.5 317 42.9
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-51 208.4 344 37.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.4e-48 198.0 339 37.2
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.3e-45 186.4 105 83.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.1e-44 184.1 114 77.2
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 5.9e-42 176.0 132 68.9
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 5.1e-38 162.9 112 74.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.8e-35 154.5 98 77.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.9e-30 136.7 157 54.1
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.9e-25 120.6 128 52.3
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.7e-23 114.0 65 86.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-22 111.3 99 54.5
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.8e-19 101.3 73 71.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.2e-18 98.6 129 45.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.2e-16 90.1 102 52.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-15 87.0 65 67.7
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 6.7e-14 82.8 99 46.5
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 4.4e-13 80.1 53 75.5
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 3.7e-12 77.0 96 49.0
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.5e-10 70.5 44 77.3
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.0e-09 68.9 54 61.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.3e-09 68.6 46 71.7
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 3.8e-09 67.0 50 62.0
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.9e-08 64.7 52 63.5
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 83.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 4.2e-08 63.5 92 47.8
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 5.5e-08 63.2 99 42.4
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-07 61.2 41 75.6
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 3.6e-07 60.5 35 77.1
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 6.1e-07 59.7 36 83.3
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 6.1e-07 59.7 119 29.4
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 8.0e-07 59.3 119 29.4
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 8.0e-07 59.3 119 29.4
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-06 58.9 119 29.4
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.0e-06 58.9 119 29.4
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 119 29.4
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 6.8e-06 56.2 119 28.6


User provided reference genes

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