Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 0.0e+00 1809.7 958 100.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 6.7e-174 615.5 996 45.3
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 9.7e-173 611.7 1005 44.7
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.8e-172 610.1 1032 45.3
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.8e-171 607.4 1032 44.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 1.3e-161 574.7 1008 42.8
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 3.8e-161 573.2 977 43.7
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 3.8e-161 573.2 1016 43.3
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 6.5e-161 572.4 991 44.1
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 8.5e-161 572.0 1007 42.3
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 5.5e-160 569.3 1002 43.2
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 6.1e-159 565.8 1016 41.9
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 2.0e-154 550.8 1050 42.5
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 4.5e-154 549.7 1017 40.9
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.6e-151 541.2 981 43.0
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.7e-148 531.2 996 41.2
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 3.7e-148 530.0 1011 41.8
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 6.3e-148 529.3 1000 40.9
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 3.1e-147 526.9 965 40.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 7.0e-147 525.8 1008 40.9
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.2e-146 525.0 1018 40.5
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 8.6e-145 518.8 1024 40.7
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.1e-144 518.5 1015 40.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 6.1e-143 512.7 986 41.4
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 3.1e-142 510.4 913 42.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 4.9e-140 503.1 1020 38.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 7.0e-139 499.2 1052 40.4
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.0e-138 497.7 989 39.8
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.0e-138 496.1 989 39.3
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.9e-137 493.4 989 39.7
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.0e-137 493.0 982 40.4
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.6e-135 488.0 909 41.8
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 4.7e-135 486.5 996 40.8
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.4e-134 485.0 1008 40.0
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.8e-134 484.6 1010 39.6
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.3e-134 484.2 908 41.3
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 4.0e-134 483.4 882 42.6
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 5.2e-134 483.0 913 41.2
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 6.8e-134 482.6 909 41.5
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.5e-133 481.5 982 40.5
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 2.0e-133 481.1 1031 37.9
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 7.5e-133 479.2 1018 39.6
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.9e-132 477.2 1038 38.6
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 2.3e-129 467.6 1018 38.6
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.1e-127 461.1 1109 37.1
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 3.6e-127 460.3 930 40.0
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 2.3e-126 457.6 1030 39.1
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 2.0e-125 454.5 1006 37.9
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 4.4e-125 453.4 862 41.1
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.4e-125 453.4 1019 37.9
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.4e-123 448.4 825 42.4
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 5.4e-123 446.4 1019 38.3
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 5.4e-123 446.4 812 42.9
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 4.6e-122 443.4 1013 38.5
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 6.0e-122 443.0 1005 37.7
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 3.9e-121 440.3 972 38.1
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 4.7e-119 433.3 1045 36.7
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 8.1e-119 432.6 1034 37.1
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.4e-118 431.0 786 41.9
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 5.2e-118 429.9 1017 37.2
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 4.4e-117 426.8 992 37.7
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.1e-115 422.2 1016 37.5
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.1e-114 417.9 1011 37.4
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 3.5e-114 417.2 815 40.5
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 7.8e-114 416.0 814 39.3
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.5e-112 411.8 1017 36.6
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.8e-111 407.5 1003 36.5
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 6.2e-111 406.4 972 38.3
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 6.9e-110 402.9 1006 36.9
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.4e-109 400.6 1078 35.8
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.4e-109 400.6 819 39.6
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 5.8e-109 399.8 1096 36.2
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 2.9e-108 397.5 921 37.9
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 4.2e-107 393.7 1027 36.0
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 9.3e-107 392.5 1000 35.7
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 2.1e-106 391.3 994 35.3
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.3e-105 387.9 1027 35.2
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.9e-105 387.1 1029 35.9
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 3.9e-105 387.1 992 35.8
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 3.3e-104 384.0 1012 35.5
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 7.3e-104 382.9 829 39.8
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 9.6e-104 382.5 1005 35.7
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 3.6e-103 380.6 984 36.2
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.4e-102 378.6 1012 35.2
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.3e-100 372.1 783 39.0
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.9e-100 370.9 998 35.1
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 3.2e-99 367.5 1008 35.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 7.1e-99 366.3 978 35.3
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 2.1e-98 364.8 1090 34.1
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 4.6e-98 363.6 1013 34.9
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 6.0e-98 363.2 1031 33.3
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.5e-96 358.6 1000 35.5
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 4.0e-94 350.5 918 35.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 2.6e-93 347.8 922 35.9
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 7.4e-88 329.7 839 36.2
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 2.8e-87 327.8 982 33.5
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 1.8e-86 325.1 1005 34.2
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 4.0e-86 323.9 831 35.6
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.7e-84 318.5 947 35.4
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.8e-84 317.4 794 34.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.9e-83 315.1 996 33.2
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 3.9e-81 307.4 904 34.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 8.7e-81 306.2 1126 30.7
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.9e-80 305.1 754 38.1
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 8.2e-79 299.7 1036 31.7
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 7.4e-72 276.6 982 32.3
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 9.7e-72 276.2 633 39.0
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.3e-63 246.9 968 31.2
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 9.1e-62 243.0 962 31.8
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 5.3e-54 217.2 157 73.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 2.0e-53 215.3 269 51.3
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.0e-48 198.7 428 37.4
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.4e-48 197.6 428 37.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.0e-44 186.4 902 27.6
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.4e-41 176.0 156 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.3e-35 154.8 1098 25.4
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.8e-33 149.1 263 41.4
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 8.0e-26 123.6 162 49.4
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 5.2e-25 120.9 133 52.6
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 7.5e-24 117.1 184 40.8
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.7e-23 115.9 1114 23.2
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.4e-22 112.8 97 62.9
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 2.4e-22 112.1 74 79.7
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 9.2e-22 110.2 289 40.1
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 9.2e-22 110.2 71 80.3
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.3e-20 105.5 73 63.0
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.6e-18 99.4 111 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 8.1e-18 97.1 132 50.8
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.7e-15 89.4 250 32.0
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 1.2e-13 83.2 187 33.2
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 2.1e-13 82.4 239 35.1
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 5.1e-12 77.8 460 31.7
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 5.8e-08 64.3 40 70.0


User provided reference genes

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