Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 3.2e-179 631.7 333 100.0
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 9.9e-40 168.3 377 33.2
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.2e-38 163.3 386 33.4
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 1.3e-36 157.9 314 35.7
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.1e-35 154.8 368 32.6
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.4e-32 142.9 353 33.4
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.7e-31 141.0 362 30.7
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 4.9e-31 139.4 363 30.9
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 5.1e-28 129.4 376 31.4
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 4.3e-27 126.3 377 28.6
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.6e-27 125.9 368 29.1
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.2e-26 122.5 337 32.0
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 8.1e-26 122.1 357 29.4
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 8.1e-26 122.1 393 29.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 5.3e-25 119.4 349 29.8
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 5.3e-25 119.4 333 29.1
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 9.0e-25 118.6 351 31.1
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.0e-24 117.5 339 31.0
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.7e-23 114.4 338 29.6
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 2.2e-23 114.0 336 31.5
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 2.9e-23 113.6 234 34.2
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 1.9e-22 110.9 327 30.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 7.1e-22 109.0 372 26.9
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 7.1e-22 109.0 386 27.5
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.2e-21 108.2 325 31.4
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.6e-21 106.3 332 28.0
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 6.0e-21 105.9 318 31.8
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.8e-20 104.4 393 25.7
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 3.0e-20 103.6 320 28.4
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 4.3e-19 99.8 365 27.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.3e-19 99.8 84 52.4
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 5.6e-19 99.4 351 27.4
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 5.6e-19 99.4 383 26.6
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 7.4e-19 99.0 381 27.3
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 2.8e-18 97.1 324 26.5
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.8e-18 97.1 84 53.6
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 1.1e-17 95.1 285 27.7
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.1e-17 95.1 376 25.3
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.4e-17 94.0 83 51.8
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.4e-17 94.0 365 24.9
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 5.3e-17 92.8 230 30.9
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 9.0e-17 92.0 92 51.1
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.2e-16 91.7 371 25.9
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.0e-16 90.9 89 51.7
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.6e-16 90.5 89 50.6
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 3.4e-16 90.1 86 51.2
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.4e-16 90.1 338 27.5
Ca_02000_v3 Cicer arietinum L. HOM05D005863 ORTHO05D003355 1.3e-15 88.2 378 27.2
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 4.9e-15 86.3 368 26.4
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 2.5e-14 84.0 73 53.4
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 3.2e-14 83.6 266 26.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 7.1e-14 82.4 81 49.4
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.6e-13 81.3 83 45.8
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 2.1e-13 80.9 387 25.8
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.1e-13 80.9 90 43.3
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 4.6e-13 79.7 82 47.6
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.6e-13 79.7 79 46.8
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 4.6e-13 79.7 82 46.3
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.0e-12 78.6 87 40.2
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.3e-12 78.2 82 47.6
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.3e-12 78.2 93 39.8
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.8e-12 77.8 92 41.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.8e-12 77.8 85 44.7
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.3e-12 77.4 79 44.3
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 2.3e-12 77.4 84 40.5
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.3e-12 77.4 79 44.3
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.3e-12 77.4 79 49.4
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 3.0e-12 77.0 79 46.8
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 3.0e-12 77.0 79 49.4
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 3.9e-12 76.6 82 45.1
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 3.9e-12 76.6 228 27.6
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 5.1e-12 76.3 82 46.3
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 5.1e-12 76.3 82 50.0
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.1e-12 76.3 84 44.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 6.7e-12 75.9 97 39.2
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 6.7e-12 75.9 89 41.6
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 8.7e-12 75.5 221 31.7
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 8.7e-12 75.5 97 36.1
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.7e-12 75.5 81 44.4
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 8.7e-12 75.5 366 23.8
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 1.1e-11 75.1 82 46.3
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.1e-11 75.1 79 45.6
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.1e-11 75.1 222 25.2
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.9e-11 74.3 90 41.1
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.9e-11 74.3 88 39.8
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.5e-11 73.9 103 35.9
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 3.3e-11 73.6 88 42.0
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 4.3e-11 73.2 82 45.1
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 4.3e-11 73.2 373 26.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 4.3e-11 73.2 87 41.4
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 5.7e-11 72.8 170 27.1
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 7.4e-11 72.4 94 37.2
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 9.6e-11 72.0 86 38.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 9.6e-11 72.0 79 41.8
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 9.6e-11 72.0 80 40.0
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 1.3e-10 71.6 82 42.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.3e-10 71.6 91 37.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.3e-10 71.6 79 41.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.6e-10 71.2 79 40.5
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 1.6e-10 71.2 87 37.9
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.6e-10 71.2 85 38.8
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 1.6e-10 71.2 82 42.7
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 2.1e-10 70.9 270 26.7
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 2.1e-10 70.9 159 30.8
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 2.1e-10 70.9 87 36.8
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.8e-10 70.5 88 39.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 2.8e-10 70.5 96 38.5
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.7e-10 70.1 79 39.2
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.7e-10 70.1 110 36.4
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 4.8e-10 69.7 90 38.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 6.2e-10 69.3 81 43.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 6.2e-10 69.3 96 39.6
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 6.2e-10 69.3 78 44.9
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 6.2e-10 69.3 88 38.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 6.2e-10 69.3 87 37.9
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 6.2e-10 69.3 87 37.9
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 8.2e-10 68.9 96 37.5
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.2e-10 68.9 93 38.7
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 8.2e-10 68.9 87 37.9
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.1e-09 68.6 102 35.3
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.1e-09 68.6 84 36.9
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.1e-09 68.6 80 38.8
C06p16270 Brassica napus HOM05D012516 ORTHO05D003355 1.4e-09 68.2 86 40.7
BolC6t36826H Brassica oleracea HOM05D012516 ORTHO05D003355 1.4e-09 68.2 86 40.7
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.4e-09 68.2 96 36.5
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.4e-09 67.4 81 39.5
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.4e-09 67.4 93 37.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.4e-09 67.4 79 39.2
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.4e-09 67.4 82 41.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 3.1e-09 67.0 79 41.8
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.1e-09 67.0 81 35.8
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.1e-09 67.0 96 36.5
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 3.1e-09 67.0 87 36.8
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.1e-09 67.0 79 39.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.1e-09 66.6 95 37.9
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.1e-09 66.6 86 38.4
BcaC08g44222 Brassica carinata HOM05D012516 ORTHO05D003355 5.3e-09 66.2 82 42.7
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 5.3e-09 66.2 88 35.2
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 5.3e-09 66.2 87 39.1
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.9e-09 65.9 162 32.7
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 9.0e-09 65.5 89 38.2
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.0e-09 65.5 81 37.0
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.0e-09 65.5 81 37.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.2e-08 65.1 85 35.3
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.2e-08 65.1 72 38.9
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 1.5e-08 64.7 83 37.3
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 3.4e-08 63.5 85 35.3
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 3.4e-08 63.5 82 36.6
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 3.4e-08 63.5 79 35.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-07 62.0 88 35.2
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-07 60.8 99 30.3
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.9e-07 60.5 104 33.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 5.0e-07 59.7 110 30.0
FAN23G2175 Fragaria x ananassa HOM05D014719 ORTHO05D003355 5.0e-07 59.7 78 42.3
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.4e-07 58.9 104 31.7
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.1e-06 58.5 85 31.8
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-06 58.5 309 27.2
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-06 58.2 92 31.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.4e-06 58.2 85 36.5
DCAR_001919 Daucus carota HOM05D005863 ORTHO05D003355 1.4e-06 58.2 148 30.4
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.4e-06 58.2 93 30.1
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.9e-06 57.8 85 34.1
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.9e-06 57.8 80 35.0
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 2.5e-06 57.4 79 36.7
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 4.2e-06 56.6 70 34.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.2e-06 56.6 85 34.1
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 5.5e-06 56.2 86 36.0
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 5.5e-06 56.2 86 37.2
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 5.5e-06 56.2 86 37.2
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 5.5e-06 56.2 86 36.0
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 5.5e-06 56.2 48 47.9
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 9.3e-06 55.5 110 30.0


User provided reference genes

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