Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 3.3e-77 291.6 142 100.0
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 2.2e-49 199.1 143 74.1
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 7.2e-48 194.1 141 68.8
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 7.2e-48 194.1 143 72.0
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 6.1e-47 191.0 145 69.7
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 1.0e-46 190.3 143 69.2
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 3.0e-46 188.7 142 70.4
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 8.8e-46 187.2 142 68.3
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.1e-45 186.8 145 67.6
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.6e-45 185.7 145 65.5
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 2.6e-45 185.7 145 65.5
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 5.7e-45 184.5 141 68.8
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.7e-44 183.0 141 66.7
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 2.2e-44 182.6 147 64.6
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 2.2e-44 182.6 141 68.8
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 6.3e-44 181.0 142 66.9
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 6.3e-44 181.0 145 67.6
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.1e-43 180.3 140 67.9
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.1e-43 180.3 140 66.4
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.4e-43 179.9 143 67.1
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 1.8e-43 179.5 141 68.1
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 3.1e-43 178.7 143 65.0
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 9.1e-43 177.2 143 67.1
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.2e-42 176.8 140 67.9
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 1.5e-42 176.4 147 63.3
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 2.0e-42 176.0 145 64.8
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.0e-42 176.0 145 64.8
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 2.6e-42 175.6 140 66.4
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 3.4e-42 175.3 142 64.1
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 3.4e-42 175.3 140 66.4
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 5.9e-42 174.5 141 67.4
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 5.9e-42 174.5 143 65.0
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 5.9e-42 174.5 148 63.5
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.7e-42 174.1 143 62.2
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 7.7e-42 174.1 145 64.1
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.7e-42 174.1 141 64.5
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 1.0e-41 173.7 141 67.4
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 1.7e-41 172.9 144 64.6
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 1.7e-41 172.9 144 62.5
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 2.2e-41 172.6 128 67.2
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 2.9e-41 172.2 151 64.9
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 2.9e-41 172.2 142 64.1
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 3.8e-41 171.8 141 65.2
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.8e-41 171.8 142 66.2
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 5.0e-41 171.4 142 63.4
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 5.0e-41 171.4 142 63.4
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 5.0e-41 171.4 142 66.2
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 6.5e-41 171.0 140 64.3
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 6.5e-41 171.0 145 65.5
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 6.5e-41 171.0 144 62.5
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 8.5e-41 170.6 146 62.3
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 8.5e-41 170.6 126 70.6
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.4e-40 169.9 139 66.9
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.9e-40 169.5 144 66.7
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 2.5e-40 169.1 141 63.1
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 2.5e-40 169.1 143 64.3
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 4.2e-40 168.3 144 61.1
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 7.2e-40 167.5 142 63.4
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 9.4e-40 167.2 145 62.8
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 1.2e-39 166.8 128 68.0
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 4.7e-39 164.9 139 64.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 4.7e-39 164.9 139 63.3
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 6.1e-39 164.5 143 61.5
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 1.0e-38 163.7 141 61.7
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 3.9e-38 161.8 141 58.9
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 3.9e-38 161.8 144 62.5
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 6.7e-38 161.0 144 60.4
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 6.7e-38 161.0 144 60.4
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 8.8e-38 160.6 140 58.6
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 2.6e-37 159.1 139 61.9
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.3e-37 158.7 144 60.4
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.3e-37 158.7 145 55.9
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 4.4e-37 158.3 145 55.9
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 5.7e-37 157.9 144 61.8
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 9.7e-37 157.1 124 69.4
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 9.7e-37 157.1 177 52.5
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.2e-36 156.0 123 64.2
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.2e-36 156.0 140 61.4
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 2.2e-36 156.0 143 61.5
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 2.8e-36 155.6 144 61.8
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 8.2e-36 154.1 139 60.4
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.1e-35 153.7 141 56.7
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 1.1e-35 153.7 140 56.4
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 1.4e-35 153.3 140 56.4
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 2.4e-35 152.5 141 58.2
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.3e-35 151.4 132 59.8
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 7.0e-35 151.0 138 55.1
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 9.1e-35 150.6 132 58.3
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.6e-34 149.8 143 60.1
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 3.5e-34 148.7 138 55.1
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 3.5e-34 148.7 145 57.2
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 7.7e-34 147.5 145 57.2
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 2.2e-33 146.0 143 55.9
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 3.8e-33 145.2 139 58.3
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 6.5e-33 144.4 148 60.1
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.9e-32 142.9 123 62.6
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 4.2e-32 141.7 148 55.4
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 1.6e-31 139.8 130 61.5
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 2.3e-30 136.0 139 55.4
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 1.2e-29 133.7 130 59.2
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 1.2e-29 133.7 130 59.2
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.5e-29 133.3 136 55.9
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 2.6e-29 132.5 129 58.9
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 4.4e-29 131.7 91 74.7
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 9.7e-29 130.6 129 58.9
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 2.2e-28 129.4 146 53.4
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 3.7e-28 128.6 144 49.3
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 1.4e-27 126.7 130 59.2
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 2.4e-27 125.9 143 49.0
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 3.1e-27 125.6 122 54.1
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 4.1e-27 125.2 126 60.3
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 9.1e-27 124.0 123 53.7
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 1.6e-26 123.2 155 50.3
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 2.0e-26 122.9 114 62.3
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 3.2e-24 115.5 141 46.8
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.6e-23 113.2 123 53.7
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.6e-23 113.2 122 50.8
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 3.6e-23 112.1 146 45.2
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 8.8e-22 107.5 90 65.6
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 8.8e-22 107.5 121 54.5
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 2.8e-20 102.4 127 50.4
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 8.3e-20 100.9 145 42.8
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-19 100.5 96 59.4
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 6.5e-17 91.3 151 40.4
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 1.4e-14 83.6 96 57.3
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 8.9e-14 80.9 96 55.2
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.2e-12 76.3 111 43.2
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 2.9e-09 65.9 88 47.7
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 6.6e-09 64.7 54 59.3
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 1.5e-08 63.5 132 37.1
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.0e-06 57.4 43 60.5
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 3.0e-06 55.8 108 38.9


User provided reference genes

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