Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 1.1e-57 226.5 125 100.0
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 6.1e-27 124.4 94 68.1
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 2.0e-25 119.4 94 67.0
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 1.3e-24 116.7 100 64.0
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 6.4e-24 114.4 104 60.6
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 8.3e-24 114.0 101 60.4
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 1.9e-23 112.8 99 61.6
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.4e-23 112.5 89 64.0
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 7.0e-23 110.9 100 59.0
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 9.2e-23 110.5 83 73.5
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.7e-22 109.0 86 66.3
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 3.5e-22 108.6 86 65.1
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 4.6e-22 108.2 95 63.2
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 1.0e-21 107.1 99 58.6
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 1.0e-21 107.1 98 59.2
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 2.3e-21 105.9 85 65.9
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 3.9e-21 105.1 101 60.4
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 8.6e-21 104.0 94 56.4
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 1.1e-20 103.6 91 64.8
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 3.3e-20 102.1 86 58.1
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 7.3e-20 100.9 88 56.8
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 2.8e-19 99.0 115 53.0
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 3.6e-19 98.6 87 60.9
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.6e-19 98.6 87 60.9
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.6e-19 98.6 87 60.9
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 4.7e-19 98.2 89 59.6
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 4.7e-19 98.2 86 55.8
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 4.7e-19 98.2 87 60.9
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 4.7e-19 98.2 88 58.0
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 6.2e-19 97.8 93 55.9
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 6.2e-19 97.8 83 62.7
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 8.0e-19 97.4 87 59.8
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 8.0e-19 97.4 87 59.8
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.1e-18 97.1 86 61.6
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 1.1e-18 97.1 85 57.6
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 1.8e-18 96.3 88 56.8
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 1.8e-18 96.3 82 62.2
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 2.3e-18 95.9 98 58.2
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 2.3e-18 95.9 89 56.2
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 3.1e-18 95.5 88 54.5
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 5.2e-18 94.7 101 55.4
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 1.5e-17 93.2 86 58.1
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 1.5e-17 93.2 85 62.4
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 3.4e-17 92.0 90 53.3
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 3.4e-17 92.0 90 53.3
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 4.4e-17 91.7 79 58.2
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 4.4e-17 91.7 86 55.8
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 5.8e-17 91.3 113 48.7
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 7.5e-17 90.9 102 56.9
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 9.8e-17 90.5 87 58.6
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 1.7e-16 89.7 88 55.7
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 1.7e-16 89.7 89 55.1
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 2.2e-16 89.4 87 58.6
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 2.9e-16 89.0 88 55.7
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 2.9e-16 89.0 86 51.2
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 3.7e-16 88.6 83 57.8
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 4.9e-16 88.2 87 55.2
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 1.4e-15 86.7 89 53.9
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.9e-15 86.3 90 51.1
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 3.2e-15 85.5 86 55.8
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 3.2e-15 85.5 88 53.4
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 3.2e-15 85.5 91 51.6
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 4.1e-15 85.1 87 57.5
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 7.0e-15 84.3 89 52.8
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 9.2e-15 84.0 106 47.2
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 9.2e-15 84.0 100 49.0
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 1.2e-14 83.6 86 58.1
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 1.6e-14 83.2 88 48.9
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.6e-14 83.2 87 51.7
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.6e-14 83.2 87 51.7
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 2.1e-14 82.8 89 53.9
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 2.7e-14 82.4 88 52.3
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 3.5e-14 82.0 89 47.2
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 6.0e-14 81.3 88 55.7
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 6.0e-14 81.3 88 55.7
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 7.8e-14 80.9 88 55.7
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 7.8e-14 80.9 88 48.9
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 1.0e-13 80.5 86 47.7
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.0e-13 80.5 89 50.6
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-13 80.1 86 52.3
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.3e-13 80.1 86 52.3
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.3e-13 80.1 86 52.3
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 1.7e-13 79.7 91 49.5
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 3.0e-13 79.0 83 51.8
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 3.9e-13 78.6 89 50.6
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 3.9e-13 78.6 91 49.5
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 5.1e-13 78.2 87 49.4
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 5.1e-13 78.2 89 50.6
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 5.1e-13 78.2 85 49.4
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 6.6e-13 77.8 82 51.2
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 6.6e-13 77.8 82 51.2
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 6.6e-13 77.8 86 46.5
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 8.6e-13 77.4 83 51.8
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.1e-12 77.0 91 47.3
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.1e-12 77.0 89 44.9
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 1.5e-12 76.6 106 45.3
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 1.5e-12 76.6 87 46.0
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 1.9e-12 76.3 90 50.0
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 1.9e-12 76.3 87 48.3
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 1.9e-12 76.3 82 51.2
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.9e-12 76.3 82 51.2
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 3.3e-12 75.5 87 47.1
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 3.3e-12 75.5 87 46.0
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 3.3e-12 75.5 87 47.1
MBI19_g22178_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 3.3e-12 75.5 66 59.1
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 4.3e-12 75.1 87 47.1
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 4.3e-12 75.1 91 50.5
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 4.3e-12 75.1 87 48.3
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 5.6e-12 74.7 90 48.9
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 5.6e-12 74.7 90 50.0
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 5.6e-12 74.7 83 50.6
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 5.6e-12 74.7 90 50.0
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 5.6e-12 74.7 64 64.1
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 7.3e-12 74.3 91 49.5
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 7.3e-12 74.3 90 47.8
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 9.5e-12 73.9 91 49.5
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 9.5e-12 73.9 90 48.9
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 9.5e-12 73.9 90 48.9
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 1.2e-11 73.6 87 50.6
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 1.6e-11 73.2 90 46.7
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 2.1e-11 72.8 85 44.7
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 2.1e-11 72.8 85 44.7
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 2.1e-11 72.8 89 49.4
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.8e-11 72.4 86 51.2
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 2.8e-11 72.4 90 50.0
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.6e-11 72.0 89 48.3
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 3.6e-11 72.0 98 44.9
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 4.7e-11 71.6 83 47.0
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 4.7e-11 71.6 89 43.8
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 4.7e-11 71.6 98 43.9
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 6.2e-11 71.2 86 47.7
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 6.2e-11 71.2 86 47.7
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 6.2e-11 71.2 88 45.5
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 8.1e-11 70.9 87 46.0
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 8.1e-11 70.9 89 47.2
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 8.1e-11 70.9 101 39.6
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 1.1e-10 70.5 87 46.0
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 1.1e-10 70.5 87 46.0
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 1.1e-10 70.5 99 42.4
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 1.8e-10 69.7 96 47.9
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 2.3e-10 69.3 87 48.3
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 4.0e-10 68.6 76 55.3
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 4.0e-10 68.6 90 44.4
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 4.0e-10 68.6 90 44.4
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 4.0e-10 68.6 86 44.2
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 4.0e-10 68.6 90 46.7
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 5.2e-10 68.2 89 44.9
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 6.8e-10 67.8 90 44.4
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 6.8e-10 67.8 89 44.9
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 6.8e-10 67.8 90 44.4
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 6.8e-10 67.8 85 41.2
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 6.8e-10 67.8 88 45.5
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 6.8e-10 67.8 89 47.2
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 8.9e-10 67.4 87 41.4
Oeu047047.1 Olea europaea HOM05D003857 ORTHO05D004454 8.9e-10 67.4 89 44.9
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 8.9e-10 67.4 97 44.3
Glyma.02G299800 Glycine max HOM05D003857 ORTHO05D004454 1.2e-09 67.0 89 44.9
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 2.6e-09 65.9 87 39.1
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 2.6e-09 65.9 84 44.0
ATR0827G129 Amborella trichopoda HOM05D003857 ORTHO05D004454 4.4e-09 65.1 75 52.0
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 5.8e-09 64.7 91 40.7
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 7.5e-09 64.3 90 42.2
TPR.G6011 Trifolium pratense HOM05D003857 ORTHO05D004454 3.7e-08 62.0 87 42.5
TWI38G0111 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 3.2e-07 58.9 76 47.4
COL.COLO4_31924 Corchorus olitorius HOM05D003857 ORTHO05D004454 9.2e-07 57.4 102 38.2
Atru.chr1.2303 Acer truncatum HOM05D003857 ORTHO05D004454 1.6e-06 56.6 49 57.1
BcaC09g50339 Brassica carinata HOM05D003857 ORTHO05D004454 2.7e-06 55.8 57 49.1


User provided reference genes

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