Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 9.3e-218 760.4 529 100.0
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.4e-88 331.3 511 64.4
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.8e-88 330.9 515 64.7
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.4e-88 330.5 501 62.3
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 4.1e-88 329.7 480 66.2
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 5.3e-88 329.3 503 62.4
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 5.3e-88 329.3 503 62.4
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.3e-88 329.3 517 64.0
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 7.0e-88 328.9 477 64.4
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.1e-88 328.6 495 63.2
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.2e-87 328.2 502 61.2
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.6e-87 327.0 479 66.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 5.9e-87 325.9 487 62.8
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 2.9e-86 323.6 489 66.1
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 8.5e-86 322.0 488 58.8
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.5e-85 320.5 467 64.5
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 3.2e-85 320.1 487 62.2
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 7.2e-85 318.9 503 61.6
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.6e-84 317.8 467 63.8
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 3.6e-84 316.6 485 64.3
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.8e-83 314.3 510 63.3
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.3e-83 313.9 507 60.0
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.9e-83 313.2 531 58.8
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 5.2e-83 312.8 535 57.2
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.3e-82 310.1 475 61.5
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 1.7e-81 307.8 472 66.7
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 4.8e-81 306.2 477 65.0
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 8.2e-81 305.4 479 57.8
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 2.4e-80 303.9 528 59.7
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 7.0e-80 302.4 501 63.1
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 9.1e-80 302.0 480 62.3
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.2e-79 301.6 520 61.3
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.5e-79 300.1 520 58.3
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 5.9e-79 299.3 477 63.3
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 1.3e-78 298.1 509 61.3
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 2.2e-78 297.4 415 64.3
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 5.5e-77 292.7 499 63.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.2e-76 291.6 468 58.3
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.6e-76 291.2 382 72.5
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.7e-76 290.4 525 60.0
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 3.6e-76 290.0 464 64.4
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 6.1e-76 289.3 518 56.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 1.0e-75 288.5 464 65.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.3e-75 287.3 467 65.1
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 3.0e-75 287.0 464 65.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 3.0e-75 287.0 466 64.6
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 4.0e-75 286.6 486 64.2
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 4.0e-75 286.6 531 57.4
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 2.0e-74 284.3 490 62.0
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.0e-74 284.3 482 64.5
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 3.3e-74 283.5 513 60.8
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 1.3e-73 281.6 469 60.3
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.7e-73 281.2 506 61.1
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 2.2e-73 280.8 472 60.6
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.8e-73 280.4 470 59.4
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 2.8e-73 280.4 506 59.9
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 3.7e-73 280.0 417 64.7
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 6.3e-73 279.3 469 59.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 6.3e-73 279.3 477 60.8
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.2e-71 275.0 517 55.7
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.2e-71 275.0 468 59.2
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 1.2e-71 275.0 477 60.4
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.6e-71 274.6 469 64.4
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 2.0e-71 274.2 525 56.0
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 2.0e-71 274.2 511 56.4
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 3.5e-71 273.5 516 56.2
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 3.5e-71 273.5 501 56.5
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 7.7e-71 272.3 469 59.1
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 7.7e-71 272.3 378 69.3
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.7e-70 271.2 476 61.8
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.8e-70 270.0 509 55.4
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 1.5e-69 268.1 468 61.5
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 1.5e-69 268.1 480 60.0
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 1.9e-69 267.7 511 56.9
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.5e-69 267.3 474 59.5
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 5.5e-69 266.2 486 60.7
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.6e-68 264.6 324 74.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.1e-68 264.2 484 62.6
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 8.0e-68 262.3 502 46.4
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 8.0e-68 262.3 505 60.4
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 3.0e-67 260.4 360 66.7
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 5.7e-66 256.1 414 62.1
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 3.7e-65 253.4 504 55.0
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 4.8e-65 253.1 291 82.1
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 8.3e-65 252.3 507 56.0
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 2.4e-64 250.8 444 62.2
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 1.2e-63 248.4 481 59.7
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.3e-62 244.2 490 53.1
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.5e-61 241.5 448 61.8
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 9.5e-61 238.8 507 55.4
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.7e-58 229.6 506 56.5
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 9.8e-58 228.8 516 53.5
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.1e-56 225.3 502 54.4
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 7.8e-55 219.2 511 56.0
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.5e-53 214.2 474 55.5
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 1.4e-51 208.4 291 81.1
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.4e-51 208.4 291 77.0
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 2.7e-47 194.1 296 56.1
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 8.0e-44 182.6 370 58.1
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.3e-41 175.3 290 73.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.1e-37 162.2 394 52.8
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.5e-37 161.0 328 63.1
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 3.1e-35 154.1 517 49.7
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 5.8e-34 149.8 137 76.6
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 7.5e-34 149.4 230 42.6
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 1.4e-32 145.2 96 72.9
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 3.0e-30 137.5 116 73.3
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 1.9e-29 134.8 93 87.1
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 8.1e-28 129.4 491 26.9
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 4.9e-25 120.2 245 44.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.6e-21 106.7 317 59.6
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 6.2e-20 103.2 71 69.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 5.8e-18 96.7 318 53.5
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 4.9e-17 93.6 330 51.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 2.4e-16 91.3 53 77.4
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.4e-16 91.3 321 53.9
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.6e-15 88.6 283 29.0
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.3e-06 58.9 288 23.3
PGSC0003DMG402029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.8e-06 58.5 73 47.9


User provided reference genes

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