Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 8.3e-168 593.6 289 100.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 6.0e-118 427.9 287 72.5
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 1.6e-115 419.9 286 71.7
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 8.1e-115 417.5 287 71.4
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.1e-114 417.2 263 76.4
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 4.0e-114 415.2 289 70.9
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.0e-114 415.2 290 71.0
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.3e-114 414.8 287 71.4
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 6.9e-114 414.5 290 71.0
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 1.2e-113 413.7 260 75.4
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 1.5e-113 413.3 271 73.8
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 2.0e-113 412.9 281 71.5
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 2.6e-113 412.5 288 71.5
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 4.5e-113 411.8 286 70.3
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 5.8e-113 411.4 288 69.4
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 9.9e-113 410.6 274 70.1
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 9.9e-113 410.6 290 70.7
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 1.7e-112 409.8 291 68.4
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 1.7e-112 409.8 287 71.1
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.2e-112 409.5 285 70.9
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.2e-112 409.5 287 70.4
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 2.9e-112 409.1 281 71.9
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 2.9e-112 409.1 286 69.9
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 4.9e-112 408.3 288 68.8
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.4e-112 407.9 265 73.2
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 8.4e-112 407.5 287 69.3
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.1e-111 407.1 286 67.8
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 3.2e-111 405.6 286 68.9
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 2.1e-110 402.9 287 68.6
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 1.8e-109 399.8 286 69.6
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.3e-109 399.4 310 65.8
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 5.1e-109 398.3 290 67.9
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 4.3e-108 395.2 267 70.4
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 4.3e-108 395.2 287 67.2
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 7.4e-108 394.4 260 73.8
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 3.7e-107 392.1 267 71.2
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 4.8e-107 391.7 319 64.6
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 6.2e-107 391.3 287 67.9
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 1.4e-106 390.2 272 70.6
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 3.1e-106 389.0 241 74.3
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 6.9e-106 387.9 271 70.8
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 6.9e-106 387.9 287 66.9
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 9.0e-106 387.5 283 65.7
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 1.2e-105 387.1 283 65.4
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 1.5e-105 386.7 278 66.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 9.9e-105 384.0 263 71.1
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 2.2e-104 382.9 218 82.6
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 2.2e-104 382.9 262 69.5
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 8.4e-104 380.9 263 71.5
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 1.4e-103 380.2 290 66.6
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.2e-103 378.6 275 66.9
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 1.2e-102 377.1 217 81.6
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 1.6e-102 376.7 254 70.9
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 1.8e-101 373.2 246 70.3
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 2.3e-101 372.9 227 77.5
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 8.7e-101 370.9 314 58.9
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 2.5e-100 369.4 228 75.9
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.3e-100 368.6 222 77.9
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 7.4e-100 367.9 288 64.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 9.6e-100 367.5 257 70.8
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.6e-99 366.7 241 71.8
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 1.5e-97 360.1 226 75.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 5.8e-97 358.2 221 77.4
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 1.3e-96 357.1 220 74.5
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.9e-96 355.9 231 73.2
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.8e-96 355.5 246 68.3
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 6.5e-96 354.8 225 73.8
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 8.4e-96 354.4 215 77.7
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.5e-95 352.8 225 73.3
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.2e-94 350.5 234 71.8
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 3.5e-94 349.0 225 73.3
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 3.5e-94 349.0 225 73.3
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 3.0e-93 345.9 225 72.0
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 3.9e-93 345.5 258 66.3
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 8.7e-93 344.4 290 62.8
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.1e-92 344.0 221 71.5
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.2e-91 339.7 231 69.3
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.2e-91 339.7 225 71.1
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 3.7e-91 339.0 225 70.7
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 3.7e-91 339.0 225 70.7
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 3.7e-91 339.0 225 70.7
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 6.3e-91 338.2 228 71.9
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 6.9e-90 334.7 225 69.3
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 2.6e-89 332.8 217 69.1
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 6.5e-88 328.2 237 69.2
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 6.5e-88 328.2 211 74.9
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.2e-87 325.9 217 69.1
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 2.1e-86 323.2 288 58.7
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.0e-85 320.9 249 64.7
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 3.0e-85 319.3 225 67.1
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 8.8e-85 317.8 237 65.4
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 6.3e-83 311.6 186 79.0
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 3.8e-80 302.4 266 59.4
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 6.5e-80 301.6 173 81.5
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 2.7e-78 296.2 174 80.5
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 3.3e-76 289.3 248 59.7
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.7e-75 285.8 176 75.6
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 4.8e-75 285.4 202 67.8
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 4.8e-75 285.4 219 60.7
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 8.2e-75 284.6 176 75.0
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.4e-66 257.3 164 76.8
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 3.1e-66 256.1 176 70.5
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.5e-52 210.7 150 70.0
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-51 206.8 175 61.1
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 3.5e-49 199.5 224 48.7
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 2.9e-48 196.4 170 58.8
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 8.6e-48 194.9 227 44.5
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.1e-47 194.5 221 42.5
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 2.5e-47 193.4 219 42.9
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 5.5e-47 192.2 114 78.9
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.6e-46 190.7 114 78.1
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.4e-42 177.6 213 42.7
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 4.5e-41 172.6 105 79.0
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 1.8e-37 160.6 97 76.3
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 1.8e-37 160.6 97 76.3
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 6.4e-35 152.1 106 66.0
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 1.2e-28 131.3 106 64.2
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 7.5e-28 128.6 135 54.1
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 7.5e-28 128.6 135 54.1
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.1e-26 124.8 79 74.7
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-23 114.8 156 45.5
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 8.1e-22 108.6 96 58.3
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.7e-19 99.8 56 83.9
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 1.6e-17 94.4 123 48.0
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.0e-16 91.7 50 86.0
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 1.6e-14 84.3 122 44.3
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 2.8e-14 83.6 91 51.6
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 4.7e-14 82.8 105 48.6
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 4.7e-14 82.8 105 48.6
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 2.4e-10 70.5 48 66.7
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 5.1e-08 62.8 36 86.1
FAN05G0193 Fragaria x ananassa HOM05D000450 ORTHO05D000327 2.1e-06 57.4 192 28.6
Cc06_g03960 Coffea canephora HOM05D000450 ORTHO05D000327 2.8e-06 57.0 190 30.0
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 3.6e-06 56.6 175 26.9
Eucgr.A01146 Eucalyptus grandis HOM05D000450 ORTHO05D000327 6.2e-06 55.8 197 29.9
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 6.2e-06 55.8 35 74.3
MBI07_g30978_MAGBIO Magnolia biondii HOM05D000450 ORTHO05D000327 8.1e-06 55.5 189 28.6
Os04g0518800 Oryza sativa ssp. japonica HOM05D000450 ORTHO05D000327 8.1e-06 55.5 197 27.4


User provided reference genes

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