Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 4.2e-186 654.4 311 100.0
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 8.1e-153 543.9 311 80.4
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.1e-152 543.5 311 80.7
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 4.0e-152 541.6 311 79.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.4e-151 538.1 311 80.7
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.2e-148 530.0 310 78.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.7e-148 528.9 311 78.5
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 3.5e-148 528.5 311 77.2
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.3e-147 525.8 311 77.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.9e-147 525.0 311 76.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.1e-146 523.5 311 77.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.5e-146 523.1 311 77.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.6e-145 519.6 311 76.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-145 519.2 311 76.5
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.6e-145 518.5 311 75.2
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.6e-145 518.5 344 71.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 4.7e-145 518.1 311 76.8
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 6.2e-145 517.7 311 76.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 8.1e-145 517.3 311 76.2
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 8.1e-145 517.3 311 76.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 8.1e-145 517.3 312 76.3
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.1e-144 516.9 311 76.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-144 516.5 311 76.2
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.8e-144 516.2 311 75.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-144 516.2 312 76.3
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 5.3e-144 514.6 311 76.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.2e-143 513.5 311 75.2
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.0e-143 512.7 311 75.9
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 4.4e-143 511.5 292 81.2
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 7.6e-143 510.8 311 74.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.7e-142 509.6 311 73.6
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-142 509.6 311 76.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-142 509.6 311 76.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.8e-142 508.4 311 76.2
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.8e-142 508.4 311 76.2
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-141 506.9 311 74.9
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.1e-141 506.9 311 74.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.9e-141 506.1 335 71.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.9e-141 506.1 335 71.9
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.4e-141 505.8 311 76.2
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.4e-141 505.8 311 74.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.2e-141 505.4 324 72.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 5.4e-141 504.6 311 74.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.4e-141 504.6 311 74.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.1e-141 504.2 311 75.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.1e-140 502.7 312 73.7
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.5e-140 501.9 312 74.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.0e-139 500.4 311 72.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 1.0e-139 500.4 311 72.0
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.1e-139 498.0 311 73.3
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 5.1e-139 498.0 311 74.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 6.6e-139 497.7 311 73.3
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 8.7e-139 497.3 291 78.0
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.1e-138 496.9 302 76.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.5e-138 495.7 311 71.7
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 4.3e-138 495.0 317 71.3
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 9.6e-138 493.8 311 72.0
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.6e-138 493.8 311 71.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 9.6e-138 493.8 312 71.8
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-137 493.4 313 72.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.3e-137 493.4 312 71.2
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.1e-137 492.7 311 71.7
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.1e-137 492.7 311 71.7
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.4e-136 490.0 311 72.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.4e-136 490.0 312 71.8
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.4e-136 489.2 311 71.1
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.4e-136 489.2 311 71.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 6.9e-136 487.6 312 72.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 9.0e-136 487.3 311 70.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.5e-135 486.5 311 70.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.0e-135 486.1 311 72.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.6e-135 485.7 311 70.1
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.6e-135 485.7 311 69.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.4e-135 485.3 311 71.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.4e-135 485.3 311 70.1
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.2e-134 482.6 321 71.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.9e-134 482.3 311 71.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 3.8e-134 481.9 321 71.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 6.4e-134 481.1 311 70.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.4e-134 481.1 313 71.9
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 8.4e-134 480.7 339 66.4
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.4e-133 479.2 322 71.1
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.2e-133 478.4 331 66.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 5.4e-133 478.0 322 70.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.4e-133 478.0 311 69.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.2e-132 476.9 312 70.5
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.6e-132 476.5 312 68.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-132 476.5 312 72.1
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.7e-132 475.7 322 70.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.7e-132 475.7 321 70.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 3.5e-132 475.3 322 70.5
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.9e-132 474.2 323 70.0
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.1e-131 471.5 322 69.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.1e-131 471.5 311 68.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.7e-131 470.7 313 69.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-130 470.3 315 69.5
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 3.3e-130 468.8 312 68.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.3e-130 468.4 330 67.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 7.4e-130 467.6 311 69.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.6e-130 467.2 324 66.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.1e-128 462.2 311 68.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 4.0e-128 461.8 311 70.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 9.0e-128 460.7 315 68.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 9.0e-128 460.7 313 69.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-127 459.9 313 69.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.5e-125 452.6 317 66.2
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.3e-123 446.8 312 67.3
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.3e-123 446.8 311 65.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 6.7e-123 444.5 311 65.6
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 1.5e-122 443.4 310 67.1
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.1e-121 439.5 311 63.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-120 436.0 335 64.2
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 9.0e-120 434.1 292 66.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.4e-119 432.2 315 67.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 5.8e-119 431.4 311 65.3
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 5.5e-117 424.9 270 72.6
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 7.1e-117 424.5 277 68.6
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.3e-115 419.5 312 62.8
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 3.7e-113 412.1 311 64.0
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.9e-109 399.8 240 77.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 6.9e-104 381.3 238 75.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 9.1e-104 380.9 246 72.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.9e-101 373.2 312 57.4
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.8e-89 332.8 197 77.2
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.8e-86 322.4 322 46.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.0e-83 314.3 313 47.6
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 2.0e-82 310.1 193 72.5
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 6.3e-81 305.1 317 46.4
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-80 303.1 333 51.7
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.3e-65 254.2 166 69.9
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.1e-59 233.0 194 61.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.3e-54 217.6 249 49.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.9e-54 216.1 157 68.8
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 2.8e-52 209.9 122 75.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 4.9e-49 199.1 124 71.0
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 4.9e-49 199.1 129 67.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 4.9e-49 199.1 129 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.7e-46 190.7 197 46.7
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.8e-42 175.6 108 74.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.7e-38 164.1 106 67.0
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-37 159.1 296 30.7
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-35 153.7 165 48.5
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.3e-30 137.9 95 71.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.1e-28 130.6 76 73.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.1e-28 130.6 76 73.7
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 9.0e-27 125.2 69 75.4
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 3.8e-25 119.8 85 63.5
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.1e-24 118.2 98 60.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-19 101.3 72 68.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-16 89.7 59 67.8
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 7.1e-16 89.0 71 53.5
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 2.1e-15 87.4 73 52.1
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.6e-13 79.3 73 49.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.7e-12 76.6 47 70.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 3.7e-12 76.6 47 70.2
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 7.1e-08 62.4 34 91.2


User provided reference genes

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