Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14300 Coffea canephora HOM05D006019 ORTHO05D007900 4.5e-300 1033.9 538 100.0
CSS0042888 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.1e-216 756.9 539 72.2
CSS0000535 Camellia sinensis var. sinensis HOM05D006019 ORTHO05D007900 1.4e-216 756.5 539 71.8
Dinv22232 Davidia involucrata HOM05D006019 ORTHO05D007900 5.6e-210 734.6 527 72.1
Eucgr.F03504 Eucalyptus grandis HOM05D006019 ORTHO05D007900 9.5e-210 733.8 487 74.9
Peaxi162Scf00235g00727 Petunia axillaris HOM05D006019 ORTHO05D007900 2.8e-209 732.3 535 69.9
GSVIVG01037722001 Vitis vinifera HOM05D006019 ORTHO05D007900 1.4e-208 729.9 537 71.1
QL08p020269 Quercus lobata HOM05D006019 ORTHO05D007900 2.9e-206 722.2 493 74.6
TAR629G1914 Trochodendron aralioides HOM05D006019 ORTHO05D007900 3.7e-206 721.8 479 74.3
Atru.chr2.3529 Acer truncatum HOM05D006019 ORTHO05D007900 4.9e-206 721.5 479 75.6
Potri.015G065900 Populus trichocarpa HOM05D006019 ORTHO05D007900 4.9e-206 721.5 470 75.7
Actinidia35369 Actinidia chinensis HOM05D006019 ORTHO05D007900 7.1e-205 717.6 473 75.5
Sabra15G0091100 Salix brachista HOM05D006019 ORTHO05D007900 7.1e-205 717.6 470 74.9
Atru.chr2.3549 Acer truncatum HOM05D006019 ORTHO05D007900 2.1e-204 716.1 532 70.1
CAN.G337.58 Capsicum annuum HOM05D006019 ORTHO05D007900 7.8e-204 714.1 541 67.8
Manes.03G136600 Manihot esculenta HOM05D006019 ORTHO05D007900 1.0e-203 713.8 501 71.3
MELO3C014178.2 Cucumis melo HOM05D006019 ORTHO05D007900 1.1e-202 710.3 544 68.0
Duzib213G0195 Durio zibethinus HOM05D006019 ORTHO05D007900 3.3e-202 708.8 544 66.9
Migut.M01708 Erythranthe guttata HOM05D006019 ORTHO05D007900 7.3e-202 707.6 549 67.2
PGSC0003DMG400022300 Solanum tuberosum HOM05D006019 ORTHO05D007900 1.6e-201 706.4 464 75.2
ClCG10G005120 Citrullus lanatus HOM05D006019 ORTHO05D007900 4.7e-201 704.9 544 67.3
Nitab4.5_0000984g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 4.7e-201 704.9 531 69.5
vmacro09689 Vaccinium macrocarpon HOM05D006019 ORTHO05D007900 6.2e-201 704.5 482 72.6
Gorai.002G093600 Gossypium raimondii HOM05D006019 ORTHO05D007900 1.8e-200 703.0 480 72.5
Nn1g07344 Nelumbo nucifera HOM05D006019 ORTHO05D007900 3.1e-200 702.2 531 67.4
Nitab4.5_0002826g0040 Nicotiana tabacum HOM05D006019 ORTHO05D007900 3.1e-200 702.2 486 74.3
Gohir.D01G070900 Gossypium hirsutum HOM05D006019 ORTHO05D007900 5.2e-200 701.4 471 73.0
Thecc.07G028300 Theobroma cacao HOM05D006019 ORTHO05D007900 8.9e-200 700.7 534 67.8
CsaV3_3G004800 Cucumis sativus L. HOM05D006019 ORTHO05D007900 1.2e-199 700.3 542 67.2
Gohir.A01G084500 Gossypium hirsutum HOM05D006019 ORTHO05D007900 1.2e-199 700.3 526 67.7
PGR031G3909 Punica granatum HOM05D006019 ORTHO05D007900 1.2e-199 700.3 469 73.6
Sopen07g033150 Solanum pennellii HOM05D006019 ORTHO05D007900 1.2e-199 700.3 495 70.7
Oeu026379.1 Olea europaea HOM05D006019 ORTHO05D007900 2.0e-199 699.5 472 73.7
Prupe.4G223000 Prunus persica HOM05D006019 ORTHO05D007900 2.0e-199 699.5 526 68.4
Solyc07g064950.3 Solanum lycopersicum HOM05D006019 ORTHO05D007900 2.6e-199 699.1 493 70.6
Phvul.008G272400 Phaseolus vulgaris HOM05D006019 ORTHO05D007900 3.4e-199 698.7 528 68.2
Glyma.02G294900 Glycine max HOM05D006019 ORTHO05D007900 5.8e-199 698.0 472 73.3
VMungo0647G0128 Vigna mungo HOM05D006019 ORTHO05D007900 5.8e-199 698.0 486 71.6
Haze_09462 Corylus avellana HOM05D006019 ORTHO05D007900 7.6e-199 697.6 457 76.4
FAN21G2609 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.3e-198 696.8 492 72.0
CANSAT11G1049 Cannabis sativa HOM05D006019 ORTHO05D007900 2.9e-198 695.7 481 71.5
CiPaw.11G172700 Carya illinoinensis HOM05D006019 ORTHO05D007900 4.9e-198 694.9 459 75.4
RcHm_v2.0_Chr5g0041541 Rosa chinensis HOM05D006019 ORTHO05D007900 4.9e-198 694.9 485 71.3
Glyma.14G018700 Glycine max HOM05D006019 ORTHO05D007900 8.4e-198 694.1 465 73.8
Lj1C880T10 Lonicera japonica HOM05D006019 ORTHO05D007900 1.1e-197 693.7 469 73.8
LjContig00272g0018197 Lotus japonicus HOM05D006019 ORTHO05D007900 3.2e-197 692.2 497 70.8
Ciclev10007944m.g Citrus clementina HOM05D006019 ORTHO05D007900 9.2e-197 690.6 473 72.1
ECA240G2757 Erigeron canadensis HOM05D006019 ORTHO05D007900 2.1e-196 689.5 489 70.8
Lsat_1_v5_gn_9_90660 Lactuca sativa HOM05D006019 ORTHO05D007900 2.7e-196 689.1 525 66.7
COL.COLO4_09733 Corchorus olitorius HOM05D006019 ORTHO05D007900 3.5e-196 688.7 471 72.0
FAN25G1378 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.7e-195 686.4 492 70.9
Sed0026759 Sechium edule HOM05D006019 ORTHO05D007900 3.9e-195 685.3 488 70.3
MD11G1209500 Malus domestica HOM05D006019 ORTHO05D007900 6.6e-195 684.5 470 72.3
HanXRQChr13g0408251 Helianthus annuus HOM05D006019 ORTHO05D007900 3.3e-194 682.2 533 64.5
THA.LOC104817684 Tarenaya hassleriana HOM05D006019 ORTHO05D007900 1.3e-193 680.2 477 71.1
Lalb_Chr04g0248161 Lupinus albus HOM05D006019 ORTHO05D007900 2.1e-193 679.5 531 65.2
Cpa.g.sc284.5 Carica papaya HOM05D006019 ORTHO05D007900 1.5e-191 673.3 503 69.8
DCAR_017106 Daucus carota HOM05D006019 ORTHO05D007900 5.8e-191 671.4 461 73.5
arahy.Tifrunner.gnm1.ann1.G2L6CM Arachis hypogaea HOM05D006019 ORTHO05D007900 9.9e-191 670.6 460 72.2
FvH4_3g23540 Fragaria vesca HOM05D006019 ORTHO05D007900 1.2e-188 663.7 467 71.7
TPR.G35353 Trifolium pratense HOM05D006019 ORTHO05D007900 1.1e-186 657.1 471 69.0
Thhalv10013195m.g Eutrema salsugineum HOM05D006019 ORTHO05D007900 1.1e-184 650.6 479 67.0
TWI39G1205 Tripterygium wilfordii HOM05D006019 ORTHO05D007900 1.5e-183 646.7 482 66.8
Medtr5g093830 Medicago truncatula HOM05D006019 ORTHO05D007900 4.5e-183 645.2 501 65.7
BcaB05g22192 Brassica carinata HOM05D006019 ORTHO05D007900 4.9e-182 641.7 470 66.6
HanXRQChr03g0076861 Helianthus annuus HOM05D006019 ORTHO05D007900 8.4e-182 641.0 531 62.0
AUR62020342 Chenopodium quinoa HOM05D006019 ORTHO05D007900 1.4e-181 640.2 495 63.8
AL8G30770 Arabidopsis lyrata HOM05D006019 ORTHO05D007900 3.2e-181 639.0 473 66.4
Ca_06346_v3 Cicer arietinum L. HOM05D006019 ORTHO05D007900 5.4e-181 638.3 440 71.1
MBI19_g29437_MAGBIO Magnolia biondii HOM05D006019 ORTHO05D007900 5.4e-181 638.3 478 66.5
AT5G55220 Arabidopsis thaliana HOM05D006019 ORTHO05D007900 9.3e-181 637.5 473 66.0
EL10Ac4g07692 Beta vulgaris HOM05D006019 ORTHO05D007900 9.3e-181 637.5 571 58.1
Aqoxy1G02863 Aquilegia oxysepala HOM05D006019 ORTHO05D007900 1.2e-180 637.1 471 66.9
Sp6g17150 Schrenkiella parvula HOM05D006019 ORTHO05D007900 1.6e-180 636.7 475 66.7
Carub.0008s1557 Capsella rubella HOM05D006019 ORTHO05D007900 3.5e-180 635.6 473 66.0
Aa31LG3G11210 Aethionema arabicum HOM05D006019 ORTHO05D007900 4.6e-180 635.2 474 66.5
CARHR268580 Cardamine hirsuta HOM05D006019 ORTHO05D007900 6.7e-179 631.3 472 66.1
BolC2t07733H Brassica oleracea HOM05D006019 ORTHO05D007900 8.7e-179 630.9 483 65.0
Rhsim04G0016400 Rhododendron simsii HOM05D006019 ORTHO05D000403 1.1e-178 630.6 554 61.0
arahy.Tifrunner.gnm1.ann1.PR9FWM Arachis hypogaea HOM05D006019 ORTHO05D007900 2.5e-178 629.4 460 68.7
BraA02t06043Z Brassica rapa HOM05D006019 ORTHO05D007900 3.3e-178 629.0 472 66.1
Psat2g009800 Pisum sativum HOM05D006019 ORTHO05D007900 7.4e-178 627.9 522 62.1
FAN16G2690 Fragaria x ananassa HOM05D006019 ORTHO05D007900 1.6e-177 626.7 492 66.7
PSO541G6030 Papaver somniferum HOM05D006019 ORTHO05D007900 4.8e-177 625.2 477 65.2
PSO675G6628 Papaver somniferum HOM05D006019 ORTHO05D007900 5.3e-176 621.7 477 64.8
Ah.06g182250 Amaranthus hybridus HOM05D006019 ORTHO05D007900 1.8e-168 596.7 501 60.1
C02p16310 Brassica napus HOM05D006019 ORTHO05D000403 9.0e-168 594.3 446 65.5
A02p09780 Brassica napus HOM05D006019 ORTHO05D000403 2.0e-167 593.2 446 65.7
ATR1128G029 Amborella trichopoda HOM05D006019 ORTHO05D007900 2.5e-165 586.3 443 65.2
AUR62015881 Chenopodium quinoa HOM05D006019 ORTHO05D007900 3.5e-164 582.4 507 59.0
Hund01957 Selenicereus undatus HOM05D006019 ORTHO05D007900 4.3e-162 575.5 472 63.3
BcaC03g14251 Brassica carinata HOM05D006019 ORTHO05D007900 6.3e-161 571.6 470 62.1
Os06g0308000 Oryza sativa ssp. japonica HOM05D006019 ORTHO05D007900 1.9e-157 560.1 498 56.6
SalBow8G4839 Salvia bowleyana HOM05D006019 ORTHO05D007900 1.0e-155 554.3 541 58.0
SGA_v2.0_scaffold171G38908 Striga asiatica HOM05D006019 ORTHO05D007900 2.0e-154 550.1 488 60.0
Zm00001eb405570 Zea mays HOM05D006019 ORTHO05D007900 3.3e-154 549.3 453 58.7
unitig_22.g6170 Utricularia gibba HOM05D006019 ORTHO05D007900 6.1e-148 528.5 373 73.2
Sc16g0005740 Simmondsia chinensis HOM05D006019 ORTHO05D007900 3.7e-145 519.2 491 58.2
BcaC03g14252 Brassica carinata HOM05D006019 ORTHO05D007900 2.4e-136 490.0 364 64.6
CDE04G0522 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 2.1e-132 476.9 401 59.1
SEGI_28230 Sequoiadendron giganteum HOM05D006019 ORTHO05D007900 1.0e-131 474.6 451 50.1
FAN11G0939 Fragaria x ananassa HOM05D006019 ORTHO05D007900 3.4e-130 469.5 327 70.3
Pp3c2_30270 Physcomitrium patens HOM05D006019 ORTHO05D007900 5.0e-126 455.7 483 48.9
Mapoly0157s0020 Marchantia polymorpha HOM05D006019 ORTHO05D007900 1.5e-125 454.1 470 48.5
Pp3c11_10950 Physcomitrium patens HOM05D006019 ORTHO05D007900 2.3e-123 446.8 454 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3732 Anthoceros agrestis HOM05D006019 ORTHO05D007900 7.5e-122 441.8 455 48.4
CBR_g21850 Chara braunii HOM05D006019 ORTHO05D007900 2.3e-118 430.3 473 46.3
FAN25G3210 Fragaria x ananassa HOM05D006019 ORTHO05D007900 4.4e-114 416.0 308 67.9
SMO361G0007 Selaginella moellendorffii HOM05D006019 ORTHO05D007900 3.3e-109 399.8 439 45.3
MCO13G367 Micromonas commoda HOM05D006019 ORTHO05D007900 1.9e-69 267.7 465 32.7
PRCOL_00002693 Prasinoderma coloniale HOM05D006019 ORTHO05D007900 8.4e-65 252.3 425 34.1
A10p12490 Brassica napus HOM05D006019 ORTHO05D007900 3.7e-52 210.3 387 40.3
Glyma.14G020800 Glycine max HOM05D006019 ORTHO05D007900 1.5e-50 204.9 137 70.1
Oeu026380.1 Olea europaea HOM05D006019 ORTHO05D007900 1.4e-48 198.4 139 71.2
VMungo0464G1494 Vigna mungo HOM05D006019 ORTHO05D007900 1.5e-45 188.3 134 64.9
HPP92_015779 Vanilla planifolia HOM05D006019 ORTHO05D007900 1.2e-39 168.7 208 44.7
TAR720G0004 Trochodendron aralioides HOM05D006019 ORTHO05D007900 4.8e-36 156.8 107 74.8
Cre01.g001750 Chlamydomonas reinhardtii HOM05D006019 ORTHO05D007900 5.0e-33 146.7 531 24.1
Glyma.14G020666 Glycine max HOM05D006019 ORTHO05D007900 1.3e-28 132.1 92 67.4
VMungo0647G0792 Vigna mungo HOM05D006019 ORTHO05D007900 9.1e-27 125.9 93 68.8
CDE04G2936 Ceratophyllum demersum HOM05D006019 ORTHO05D007900 5.5e-24 116.7 67 85.1
BolC9t57451H Brassica oleracea HOM05D006019 ORTHO05D007900 4.4e-21 107.1 195 35.4
Hma1.2p1_4091F.1_g338270 Hydrangea macrophylla HOM05D006019 ORTHO05D007900 5.7e-21 106.7 114 57.9
BraA10t43342Z Brassica rapa HOM05D006019 ORTHO05D007900 1.7e-20 105.1 210 35.7
C09p45770 Brassica napus HOM05D006019 ORTHO05D007900 4.1e-19 100.5 220 32.3
C09p45760 Brassica napus HOM05D006019 ORTHO05D007900 5.9e-18 96.7 108 53.7
BcaC04g20257 Brassica carinata HOM05D006019 ORTHO05D007900 2.6e-13 81.3 80 57.5
Ca_29171_v3 Cicer arietinum L. HOM05D006019 ORTHO05D003051 1.8e-11 75.1 413 22.5
unitig_22.g6169 Utricularia gibba HOM05D006019 ORTHO05D007900 5.9e-10 70.1 79 45.6


User provided reference genes

Program Settings