Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.8e-70 267.7 134 100.0
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 1.3e-22 110.2 70 75.7
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 3.7e-22 108.6 70 75.7
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.4e-22 107.8 68 75.0
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 8.3e-22 107.5 72 73.6
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 1.1e-21 107.1 70 75.7
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.9e-21 106.3 70 75.7
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.9e-21 106.3 70 75.7
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.9e-21 106.3 101 53.5
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 1.9e-21 106.3 68 70.6
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.4e-21 105.9 69 71.0
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 3.2e-21 105.5 70 72.9
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 3.2e-21 105.5 66 74.2
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 3.2e-21 105.5 68 73.5
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 3.2e-21 105.5 69 72.5
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 4.1e-21 105.1 68 70.6
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.4e-21 104.8 70 74.3
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 5.4e-21 104.8 70 74.3
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 5.4e-21 104.8 70 71.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.4e-21 104.8 70 74.3
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 7.1e-21 104.4 71 71.8
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 7.1e-21 104.4 61 78.7
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.2e-20 103.6 68 70.6
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 2.1e-20 102.8 70 70.0
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.7e-20 102.4 68 70.6
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 4.6e-20 101.7 68 70.6
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 4.6e-20 101.7 73 71.2
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 4.6e-20 101.7 70 70.0
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 6.0e-20 101.3 67 68.7
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 6.0e-20 101.3 67 68.7
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 6.0e-20 101.3 64 73.4
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 6.0e-20 101.3 72 68.1
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.0e-19 100.5 70 70.0
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.7e-19 99.8 70 68.6
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.3e-19 99.4 71 66.2
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.3e-19 99.4 67 70.1
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 3.9e-19 98.6 68 66.2
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 3.9e-19 98.6 68 66.2
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 3.9e-19 98.6 68 66.2
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 3.9e-19 98.6 70 67.1
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.9e-19 98.6 70 60.0
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 3.9e-19 98.6 70 65.7
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 3.9e-19 98.6 70 65.7
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 3.9e-19 98.6 68 66.2
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 5.1e-19 98.2 71 64.8
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.1e-19 98.2 72 68.1
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.1e-19 98.2 72 68.1
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 5.1e-19 98.2 67 68.7
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 6.6e-19 97.8 68 66.2
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 6.6e-19 97.8 67 67.2
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 6.6e-19 97.8 67 64.2
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 6.6e-19 97.8 68 66.2
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.6e-19 97.4 70 58.6
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 8.6e-19 97.4 69 66.7
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 8.6e-19 97.4 69 66.7
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 8.6e-19 97.4 72 65.3
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.1e-18 97.1 71 63.4
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 1.1e-18 97.1 68 66.2
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 1.1e-18 97.1 66 68.2
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 1.1e-18 97.1 66 68.2
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 1.1e-18 97.1 66 68.2
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 1.1e-18 97.1 66 68.2
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.1e-18 97.1 70 64.3
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 1.1e-18 97.1 64 68.8
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 1.1e-18 97.1 64 68.8
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.5e-18 96.7 67 62.7
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 1.9e-18 96.3 69 63.8
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.9e-18 96.3 67 62.7
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-18 96.3 60 66.7
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.9e-18 96.3 60 66.7
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.9e-18 96.3 60 66.7
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 1.9e-18 96.3 70 67.1
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 2.5e-18 95.9 59 72.9
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.5e-18 95.9 68 64.7
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 2.5e-18 95.9 68 64.7
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 2.5e-18 95.9 68 64.7
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 2.5e-18 95.9 81 59.3
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 3.3e-18 95.5 68 64.7
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 3.3e-18 95.5 68 64.7
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 3.3e-18 95.5 68 64.7
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 3.3e-18 95.5 66 68.2
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.3e-18 95.5 71 63.4
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 3.3e-18 95.5 70 68.6
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 4.3e-18 95.1 66 65.2
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.3e-18 95.1 67 61.2
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.3e-18 95.1 67 61.2
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 4.3e-18 95.1 68 63.2
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 4.3e-18 95.1 68 63.2
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 5.6e-18 94.7 60 66.7
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 5.6e-18 94.7 69 66.7
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 7.3e-18 94.4 68 63.2
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 7.3e-18 94.4 64 65.6
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 9.5e-18 94.0 64 64.1
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 9.5e-18 94.0 64 64.1
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 9.5e-18 94.0 67 65.7
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.2e-17 93.6 68 63.2
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.2e-17 93.6 68 63.2
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.6e-17 93.2 70 64.3
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.1e-17 92.8 67 64.2
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 4.7e-17 91.7 68 63.2
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.4e-16 90.1 68 61.8
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 6.8e-16 87.8 50 76.0
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 8.9e-16 87.4 79 55.7
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 2.6e-15 85.9 67 58.2
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 7.6e-15 84.3 55 70.9
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.7e-14 83.2 68 57.4
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 1.7e-14 83.2 60 63.3
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.9e-14 82.4 58 65.5
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 9.2e-13 77.4 51 68.6
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 4.6e-12 75.1 57 61.4
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 1.4e-08 63.5 59 45.8


User provided reference genes

Program Settings