Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 5.1e-84 314.3 153 100.0
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 5.9e-48 194.5 143 69.2
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.5e-46 189.9 143 67.8
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 3.2e-46 188.7 154 64.9
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 6.8e-44 181.0 143 66.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 6.8e-44 181.0 144 65.3
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 1.5e-43 179.9 144 64.6
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.4e-43 178.7 143 65.7
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 3.4e-43 178.7 143 66.4
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.7e-42 175.3 139 68.3
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 4.9e-42 174.9 164 59.1
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 2.4e-41 172.6 148 64.2
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 3.1e-41 172.2 153 60.1
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 1.6e-40 169.9 143 60.8
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 6.6e-39 164.5 149 59.1
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 1.9e-38 162.9 157 59.2
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.5e-38 162.5 143 59.4
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 3.3e-38 162.2 144 60.4
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.6e-37 159.8 150 58.0
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 3.6e-37 158.7 147 57.8
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.4e-36 156.8 146 61.0
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 1.8e-36 156.4 143 58.7
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 2.3e-36 156.0 150 59.3
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 3.0e-36 155.6 147 59.9
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 3.0e-36 155.6 148 56.1
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 5.2e-36 154.8 145 60.0
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 8.9e-36 154.1 146 59.6
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.4e-35 151.8 149 58.4
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 1.3e-34 150.2 146 55.5
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.7e-34 149.8 156 53.8
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.7e-34 149.8 143 56.6
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 2.2e-34 149.4 145 59.3
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 3.7e-34 148.7 156 54.5
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 4.9e-34 148.3 148 58.8
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 4.9e-34 148.3 144 59.0
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 8.3e-34 147.5 143 53.1
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-33 147.1 157 57.3
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.1e-33 147.1 143 57.3
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 1.4e-33 146.7 146 56.2
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.8e-33 146.4 146 56.8
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 1.8e-33 146.4 151 56.3
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 2.4e-33 146.0 144 55.6
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 3.2e-33 145.6 149 57.0
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 4.1e-33 145.2 149 54.4
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 7.0e-33 144.4 160 52.5
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 1.2e-32 143.7 145 55.2
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 2.0e-32 142.9 151 55.6
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 2.0e-32 142.9 149 56.4
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.7e-32 142.5 148 58.8
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 2.7e-32 142.5 193 45.6
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.3e-31 139.4 151 56.3
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 2.3e-31 139.4 150 52.7
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 2.3e-31 139.4 149 55.0
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 3.0e-31 139.0 149 54.4
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 8.6e-31 137.5 164 51.2
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 1.5e-30 136.7 150 52.7
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 3.3e-30 135.6 150 52.7
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 5.6e-30 134.8 149 52.3
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 7.3e-30 134.4 139 57.6
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 7.3e-30 134.4 145 51.7
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 1.2e-29 133.7 150 51.3
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 1.6e-29 133.3 140 57.1
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 6.2e-29 131.3 153 52.9
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.0e-28 130.6 149 51.7
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 2.3e-28 129.4 143 51.0
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 2.3e-28 129.4 150 52.0
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 3.1e-28 129.0 174 49.4
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 2.6e-27 125.9 143 53.1
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 5.8e-27 124.8 143 53.1
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 7.5e-27 124.4 148 49.3
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 4.9e-26 121.7 155 46.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 6.4e-26 121.3 152 50.0
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 8.3e-26 120.9 152 48.7
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 5.4e-25 118.2 127 54.3
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.3e-23 113.6 146 45.2
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.5e-22 110.2 143 47.6
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.9e-22 109.8 178 42.1
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 5.6e-22 108.2 176 40.9
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 1.2e-21 107.1 154 48.1
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 3.1e-20 102.4 144 43.8
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 2.0e-19 99.8 157 42.7
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 5.8e-19 98.2 152 46.1
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 3.7e-18 95.5 158 41.8
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 4.1e-17 92.0 104 52.9
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 3.1e-12 75.9 75 53.3
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.3e-10 70.5 206 30.1


User provided reference genes

Program Settings