Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 1.7e-167 592.8 344 100.0
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.3e-161 572.4 344 95.6
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 8.8e-108 394.4 327 70.3
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 8.8e-108 394.4 322 73.0
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 1.8e-105 386.7 335 69.6
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 2.4e-105 386.3 184 100.0
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 6.9e-105 384.8 320 71.2
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 3.4e-104 382.5 320 70.6
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.3e-103 380.6 323 65.6
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 6.5e-103 378.3 325 68.3
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.4e-100 370.5 325 68.0
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 2.0e-99 366.7 320 69.4
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 2.6e-99 366.3 327 68.5
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 2.6e-99 366.3 327 65.4
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 3.3e-99 365.9 327 67.9
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 2.8e-98 362.8 325 67.7
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 8.2e-98 361.3 326 67.5
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 4.1e-97 359.0 328 66.2
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 2.6e-96 356.3 319 68.3
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.3e-95 354.0 325 64.3
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 2.9e-95 352.8 323 68.7
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 3.8e-95 352.4 328 59.5
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 5.0e-95 352.1 327 61.8
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 6.5e-95 351.7 315 69.5
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 2.5e-94 349.7 324 65.1
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 3.2e-94 349.4 314 68.8
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 3.2e-94 349.4 322 67.4
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 3.2e-94 349.4 322 67.1
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 4.2e-94 349.0 322 65.8
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.2e-94 349.0 314 68.8
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 4.2e-94 349.0 319 66.8
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 5.5e-94 348.6 344 64.5
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 1.2e-93 347.4 323 66.3
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 1.6e-93 347.1 360 55.6
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 4.7e-93 345.5 344 64.2
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 4.7e-93 345.5 322 65.5
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 6.1e-93 345.1 323 60.7
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 1.4e-92 344.0 314 68.2
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 4.0e-92 342.4 338 61.8
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 2.0e-91 340.1 344 62.8
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 5.7e-91 338.6 344 55.5
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 9.7e-91 337.8 326 62.6
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.3e-90 337.4 320 66.6
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.2e-90 336.7 326 62.3
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 2.2e-90 336.7 322 64.9
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 3.7e-90 335.9 324 61.1
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 8.2e-90 334.7 322 62.4
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 8.2e-90 334.7 335 61.2
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 1.1e-89 334.3 321 64.2
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 5.3e-89 332.0 320 63.8
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 5.3e-89 332.0 317 65.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 5.3e-89 332.0 340 56.8
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 7.0e-89 331.6 321 65.1
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 7.0e-89 331.6 320 63.1
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 7.0e-89 331.6 317 66.2
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 9.1e-89 331.3 320 64.7
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 1.6e-88 330.5 320 64.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 1.6e-88 330.5 321 64.8
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.0e-88 330.1 320 63.1
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.0e-88 330.1 319 62.7
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 2.7e-88 329.7 324 59.9
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.2e-87 326.6 318 64.8
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 1.9e-86 323.6 340 49.1
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 3.2e-86 322.8 324 60.5
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 4.2e-86 322.4 356 53.1
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 5.5e-86 322.0 316 64.2
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 5.5e-86 322.0 316 63.9
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 9.4e-86 321.2 327 62.1
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 2.1e-85 320.1 317 63.1
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.1e-85 320.1 321 63.6
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 4.7e-85 318.9 316 63.6
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 6.1e-85 318.5 328 61.3
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 8.0e-85 318.2 318 63.2
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 3.0e-84 316.2 324 63.0
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 8.8e-84 314.7 323 61.9
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 1.5e-83 313.9 321 60.4
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 2.0e-83 313.5 318 62.6
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 9.8e-83 311.2 321 55.1
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 2.8e-82 309.7 320 61.6
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 2.8e-82 309.7 320 61.6
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 3.7e-82 309.3 316 62.7
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 5.4e-81 305.4 326 58.3
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 5.9e-80 302.0 320 58.1
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 7.7e-80 301.6 325 57.5
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 2.2e-79 300.1 298 64.1
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 3.8e-79 299.3 351 47.0
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 6.5e-79 298.5 309 61.2
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 1.5e-78 297.4 338 56.2
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 5.5e-78 295.4 329 56.5
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 2.6e-75 286.6 286 65.0
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 6.3e-74 282.0 316 56.3
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 9.2e-73 278.1 318 58.8
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 9.2e-73 278.1 318 58.8
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.5e-72 276.2 314 58.3
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.3e-71 274.2 316 57.0
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 8.0e-69 265.0 309 56.6
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.8e-65 253.8 184 65.2
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 3.5e-64 249.6 167 69.5
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 3.9e-63 246.1 171 67.8
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.5e-62 243.4 314 51.3
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 6.2e-61 238.8 320 53.4
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 8.0e-61 238.4 196 58.7
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 9.8e-59 231.5 251 48.6
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 7.0e-57 225.3 170 61.2
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 9.2e-57 224.9 162 65.4
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 7.8e-56 221.9 161 65.2
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 6.6e-55 218.8 175 60.6
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 1.4e-52 211.1 320 42.8
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.7e-50 203.0 175 57.7
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 1.7e-47 194.1 169 55.0
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 2.1e-40 170.6 165 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 8.1e-37 158.7 214 60.3
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 8.1e-37 158.7 164 47.0
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.4e-36 157.1 186 45.2
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 6.6e-31 139.0 332 38.0
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.4e-28 131.3 253 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 2.2e-26 124.0 169 38.5
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.4e-25 121.3 95 57.9
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 7.9e-24 115.5 256 46.9
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 1.0e-23 115.2 94 60.6
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 6.6e-23 112.5 74 70.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.1e-22 111.7 339 27.4
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 1.9e-22 110.9 74 67.6
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.6e-19 100.5 71 69.0
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 6.7e-15 85.9 59 69.5
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 9.6e-14 82.0 59 64.4
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 3.4e-11 73.6 119 37.8
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 3.4e-11 73.6 49 71.4
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 1.9e-09 67.8 182 26.9
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 6.7e-07 59.3 54 57.4
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 8.7e-07 58.9 151 30.5
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 5.7e-06 56.2 49 55.1
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 7.4e-06 55.8 90 42.2


User provided reference genes

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