Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 9.6e-101 370.2 187 100.0
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 9.4e-64 247.3 189 68.8
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-63 246.1 188 68.1
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.1e-63 246.1 188 68.1
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 5.2e-62 241.5 188 64.9
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 4.4e-61 238.4 187 67.4
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 5.7e-61 238.0 187 63.1
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 5.7e-61 238.0 187 64.2
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 9.7e-61 237.3 187 66.8
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 1.7e-60 236.5 189 67.2
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 1.7e-60 236.5 187 66.8
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 8.2e-60 234.2 189 65.1
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 7.0e-59 231.1 187 64.2
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 9.1e-59 230.7 192 65.1
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 1.2e-58 230.3 187 66.8
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 3.5e-58 228.8 187 63.1
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 4.5e-58 228.4 192 64.1
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 4.5e-58 228.4 189 63.0
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 5.9e-58 228.0 187 62.6
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 7.7e-58 227.6 189 63.0
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 7.7e-58 227.6 187 64.7
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.0e-57 227.3 187 65.8
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.3e-57 226.9 187 62.0
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 1.3e-57 226.9 192 63.0
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 2.2e-57 226.1 189 65.1
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 2.9e-57 225.7 190 61.6
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 5.0e-57 224.9 188 64.4
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 8.5e-57 224.2 188 60.6
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 1.1e-56 223.8 189 59.3
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.1e-56 223.8 188 61.7
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 2.5e-56 222.6 190 63.2
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 2.5e-56 222.6 190 63.2
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 3.2e-56 222.2 188 62.8
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 5.5e-56 221.5 188 60.1
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 5.5e-56 221.5 192 60.4
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 5.5e-56 221.5 189 60.3
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 5.5e-56 221.5 189 62.4
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 5.5e-56 221.5 190 62.6
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 7.2e-56 221.1 190 62.1
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 9.4e-56 220.7 191 62.3
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.2e-55 220.3 188 60.6
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.2e-55 220.3 190 64.2
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 1.6e-55 219.9 188 63.3
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 2.1e-55 219.5 176 65.3
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 2.7e-55 219.2 187 60.4
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 2.7e-55 219.2 190 61.6
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 2.7e-55 219.2 189 61.4
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 4.7e-55 218.4 187 61.5
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 1.4e-54 216.9 189 57.7
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 1.8e-54 216.5 196 58.7
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 1.8e-54 216.5 188 59.6
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 2.3e-54 216.1 190 58.4
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 4.0e-54 215.3 188 62.2
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 4.0e-54 215.3 192 60.4
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 8.8e-54 214.2 188 61.2
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 1.2e-53 213.8 192 59.9
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 1.2e-53 213.8 192 59.9
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 3.4e-53 212.2 189 59.8
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 7.5e-53 211.1 192 57.3
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 1.3e-52 210.3 236 52.1
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 1.3e-52 210.3 189 59.3
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 2.8e-52 209.1 188 58.0
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 4.8e-52 208.4 187 58.8
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 6.3e-52 208.0 187 57.2
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 8.3e-52 207.6 167 62.9
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.4e-51 206.8 198 55.6
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 1.4e-51 206.8 189 59.8
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 1.4e-51 206.8 187 58.3
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.8e-51 206.5 188 60.6
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 2.4e-51 206.1 189 57.7
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 4.1e-51 205.3 192 55.2
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 9.1e-51 204.1 132 75.8
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.2e-50 203.8 154 68.2
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 2.7e-50 202.6 203 52.2
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 3.5e-50 202.2 153 68.0
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 4.5e-50 201.8 200 53.0
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 3.8e-49 198.7 216 53.2
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 6.5e-49 198.0 134 72.4
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.9e-48 196.4 187 57.8
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.9e-48 196.4 183 57.4
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.2e-47 193.7 133 69.2
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 2.1e-47 193.0 225 51.6
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 4.7e-47 191.8 167 59.9
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 6.1e-47 191.4 190 58.4
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 1.4e-46 190.3 147 64.6
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 2.3e-46 189.5 212 52.8
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 4.0e-46 188.7 134 66.4
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 8.8e-46 187.6 187 53.5
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.3e-44 183.7 157 63.1
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 2.2e-44 183.0 132 65.9
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 4.1e-43 178.7 150 66.7
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 2.0e-42 176.4 146 63.0
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 1.5e-40 170.2 156 57.1
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 9.5e-40 167.5 192 52.1
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 1.4e-38 163.7 135 67.4
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 1.8e-38 163.3 154 55.8
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 3.0e-38 162.5 208 47.1
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 5.7e-37 158.3 190 48.9
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 9.8e-37 157.5 229 43.7
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.8e-35 153.3 91 75.8
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 5.4e-35 151.8 119 62.2
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 3.9e-33 145.6 115 64.3
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 1.2e-31 140.6 191 47.1
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 3.6e-31 139.0 126 61.1
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 7.5e-29 131.3 223 39.9
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 1.7e-28 130.2 74 77.0
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 1.1e-27 127.5 79 77.2
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 6.0e-26 121.7 122 59.0
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 6.0e-26 121.7 122 59.0
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 5.0e-25 118.6 197 37.6
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 2.6e-21 106.3 147 42.2
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 1.6e-18 97.1 115 54.8
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 1.5e-13 80.5 113 47.8
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 2.5e-08 63.2 53 60.4
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 1.6e-07 60.5 66 57.6
vmacro02234 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 4.7e-07 58.9 77 48.1
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 1.4e-06 57.4 116 42.2


User provided reference genes

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