Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 3.5e-239 831.2 428 100.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 7.8e-231 803.5 426 96.5
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 2.9e-185 652.1 427 78.7
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.9e-185 652.1 427 78.2
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.1e-181 640.2 431 77.3
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 2.2e-180 636.0 426 76.5
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.2e-178 630.2 426 75.8
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.4e-178 628.6 420 77.6
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.2e-177 625.9 420 76.9
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.9e-177 625.5 428 76.4
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 3.8e-177 625.2 434 75.3
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 5.0e-177 624.8 427 75.6
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 5.0e-177 624.8 426 75.1
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.1e-176 623.6 434 74.9
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.1e-175 619.4 426 73.7
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 1.8e-174 616.3 420 75.7
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.9e-173 612.8 430 74.4
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.0e-170 602.8 420 74.0
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 4.5e-170 601.7 426 73.9
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.3e-169 600.1 420 74.3
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 3.8e-169 598.6 445 70.3
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 5.0e-169 598.2 426 72.8
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.4e-168 596.7 427 74.0
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 5.5e-168 594.7 429 73.9
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 7.2e-168 594.3 422 72.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 7.2e-168 594.3 428 71.7
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 9.4e-168 594.0 420 73.3
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 9.4e-168 594.0 420 73.1
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 9.4e-168 594.0 420 74.3
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.2e-167 593.6 429 72.0
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 7.9e-167 590.9 426 70.9
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.3e-166 589.3 430 72.8
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.9e-166 588.6 420 73.1
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 6.7e-166 587.8 428 72.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 6.7e-166 587.8 424 71.5
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.1e-165 587.0 420 74.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.0e-165 586.3 420 74.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 2.6e-165 585.9 420 74.3
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 2.6e-165 585.9 420 74.3
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 2.6e-165 585.9 420 74.3
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 2.6e-165 585.9 422 73.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 3.3e-165 585.5 420 74.3
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 3.3e-165 585.5 420 74.3
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 1.7e-164 583.2 420 73.8
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.7e-164 583.2 465 67.3
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 2.2e-164 582.8 420 74.0
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 2.2e-164 582.8 429 69.0
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.8e-164 582.4 420 74.0
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 4.8e-164 581.6 428 70.1
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.1e-163 580.5 421 71.7
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.4e-163 580.1 428 70.8
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.8e-163 579.7 461 68.1
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.2e-162 577.0 429 71.1
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 5.9e-162 574.7 430 69.8
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.7e-161 573.2 430 69.8
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.7e-161 573.2 420 72.6
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.8e-161 572.0 439 69.2
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 5.0e-161 571.6 428 70.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 5.0e-161 571.6 420 72.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 8.5e-161 570.9 430 69.1
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.9e-160 569.7 429 69.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 5.5e-160 568.2 420 72.4
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 7.2e-160 567.8 426 70.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 2.1e-159 566.2 428 69.4
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.7e-159 565.1 444 68.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.1e-159 564.7 421 69.4
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 8.0e-159 564.3 430 68.1
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 8.0e-159 564.3 427 70.5
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-158 563.9 428 68.9
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.4e-158 563.5 420 71.0
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.3e-158 562.8 425 71.3
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.7e-158 561.2 423 69.3
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 6.7e-158 561.2 428 68.5
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 2.0e-157 559.7 428 67.8
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.6e-157 559.3 426 69.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 3.3e-157 558.9 407 71.3
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 5.7e-157 558.1 383 74.9
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 7.4e-157 557.8 429 67.8
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.3e-156 557.0 424 70.5
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.2e-156 556.2 427 69.6
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.7e-156 555.4 421 68.9
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 4.8e-156 555.1 428 67.1
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.4e-155 553.5 415 71.3
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.8e-155 553.1 430 68.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 4.1e-155 552.0 465 65.4
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 4.1e-155 552.0 428 67.1
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 9.1e-155 550.8 415 71.6
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.0e-154 549.7 428 66.4
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 5.9e-154 548.1 431 68.4
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 2.2e-153 546.2 435 69.0
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 6.5e-153 544.7 380 73.9
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.5e-152 543.5 420 68.8
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 5.5e-152 541.6 428 65.4
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.0e-150 535.8 423 67.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-149 533.9 421 67.0
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 5.7e-149 531.6 427 66.5
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 1.4e-147 526.9 428 67.8
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-146 522.7 463 61.3
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.7e-145 520.0 434 67.3
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.5e-144 516.9 425 67.3
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 2.5e-144 516.2 432 64.1
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.2e-143 513.8 514 57.4
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.7e-143 511.9 425 64.9
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.8e-142 510.0 511 56.4
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.3e-140 503.8 424 63.0
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 9.1e-139 497.7 427 63.9
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 9.8e-133 477.6 416 60.6
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.7e-132 476.9 428 61.2
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 3.7e-132 475.7 388 68.3
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 8.3e-132 474.6 380 69.5
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.7e-129 466.8 499 56.3
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.9e-129 465.7 376 67.6
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.6e-127 459.1 420 61.4
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 4.7e-127 458.8 416 59.1
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.9e-121 439.1 412 57.5
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 5.0e-121 438.7 441 55.1
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-119 434.1 399 58.4
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 7.5e-117 424.9 362 63.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 3.5e-114 416.0 413 56.2
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 6.0e-114 415.2 344 64.5
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 5.1e-113 412.1 388 60.3
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.2e-111 407.5 318 67.3
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.8e-110 403.7 423 53.2
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.3e-110 403.3 432 53.0
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.9e-105 386.0 427 53.4
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.1e-103 380.2 355 58.3
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.4e-100 368.6 434 48.4
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 6.5e-68 262.3 221 63.3
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 3.1e-62 243.4 385 37.4
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.4e-59 234.6 427 36.3
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 5.3e-38 162.9 204 49.0
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.8e-23 114.0 83 69.9
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 3.7e-15 87.0 55 70.9
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 44 81.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.9e-12 77.4 44 81.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.0e-08 64.7 53 67.9


User provided reference genes

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