Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.4e-141 504.6 252 100.0
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.5e-133 479.6 250 94.0
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.6e-133 478.8 250 93.6
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 5.8e-133 477.6 250 92.8
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.1e-131 473.4 250 91.2
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.9e-131 472.6 250 92.8
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.4e-131 471.1 250 92.8
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 5.4e-131 471.1 250 93.2
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 9.2e-131 470.3 250 90.4
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.2e-130 469.9 250 90.4
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.1e-130 469.2 249 92.4
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 4.6e-130 468.0 249 90.4
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 1.7e-129 466.1 250 90.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 3.0e-129 465.3 250 90.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 4.3e-128 461.5 250 90.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.1e-126 455.3 250 88.8
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.1e-126 455.3 250 89.2
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 89.2
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 89.2
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 6.8e-126 454.1 249 88.8
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 8.9e-126 453.8 250 88.4
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.2e-125 453.4 249 90.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.5e-125 453.0 250 88.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.6e-125 452.2 249 88.8
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 250 88.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 5.8e-125 451.1 249 88.4
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 5.8e-125 451.1 250 88.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 7.5e-125 450.7 249 88.0
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 9.9e-125 450.3 270 85.2
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 9.9e-125 450.3 250 88.8
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 88.0
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 88.0
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.3e-124 449.9 250 88.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 88.0
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 88.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.9e-124 448.0 258 86.0
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 4.9e-124 448.0 250 88.8
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 8.3e-124 447.2 270 83.3
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.1e-123 446.8 244 89.8
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.1e-123 446.8 250 88.0
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.9e-123 446.0 244 88.5
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 2.4e-123 445.7 250 88.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 3.2e-123 445.3 244 88.9
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 4.1e-123 444.9 249 88.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.4e-123 444.5 250 86.0
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 7.1e-123 444.1 249 88.0
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 86.4
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 86.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 87.6
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.1e-122 442.6 250 86.8
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 2.1e-122 442.6 244 88.5
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.7e-122 442.2 249 86.3
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 3.5e-122 441.8 249 87.1
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.0e-121 440.3 244 87.7
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.3e-121 439.9 255 84.3
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.3e-121 439.1 249 86.3
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 3.0e-121 438.7 249 84.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 3.9e-121 438.3 244 87.7
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 5.1e-121 438.0 249 87.1
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 5.1e-121 438.0 249 87.1
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 1.1e-120 436.8 250 84.0
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.5e-120 436.4 249 86.7
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.9e-120 436.0 250 83.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.9e-120 436.0 249 85.1
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 84.0
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 83.6
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 83.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 83.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.5e-120 435.6 250 86.4
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.5e-120 435.6 244 87.3
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 3.3e-120 435.3 250 83.6
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 4.3e-120 434.9 250 83.2
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 4.3e-120 434.9 233 88.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.2e-119 433.3 250 83.2
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.2e-119 433.3 248 85.9
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-119 433.3 244 87.7
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 2.1e-119 432.6 250 83.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 2.1e-119 432.6 250 83.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 3.6e-119 431.8 244 87.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 4.7e-119 431.4 250 83.2
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 8.1e-119 430.6 233 91.4
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.8e-118 429.5 249 85.5
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.1e-118 428.7 250 84.4
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 8.9e-118 427.2 250 82.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 3.4e-117 425.2 250 85.6
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 9.9e-117 423.7 296 74.7
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.9e-116 421.4 358 63.4
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-115 420.2 234 87.6
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.2e-115 418.3 297 71.0
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.6e-114 416.4 250 80.4
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.3e-113 413.3 250 83.6
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 3.3e-112 408.7 255 82.7
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 8.1e-111 404.1 249 79.1
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.6e-109 399.1 249 78.3
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.6e-106 389.8 246 74.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 9.6e-104 380.6 222 81.1
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 1.4e-102 376.7 213 85.4
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 3.1e-102 375.6 248 74.2
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 3.1e-102 375.6 242 72.7
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.7e-100 369.8 239 75.7
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 4.2e-99 365.2 250 74.8
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.0e-97 360.5 250 72.8
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 3.3e-96 355.5 237 73.8
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 3.1e-94 349.0 250 72.4
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 1.9e-91 339.7 246 66.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.0e-90 334.7 206 80.1
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.3e-88 328.6 194 84.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.0e-85 319.7 187 84.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.9e-84 315.8 181 84.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 6.0e-82 308.1 324 53.7
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 8.5e-76 287.7 207 70.5
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 3.2e-75 285.8 240 55.8
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.8e-73 280.0 151 92.1
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 5.7e-72 275.0 184 72.3
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 4.2e-67 258.8 249 51.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 6.7e-65 251.5 152 78.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 6.7e-65 251.5 211 65.9
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 5.7e-64 248.4 198 64.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 6.7e-57 224.9 250 53.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.7e-52 210.3 123 83.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.6e-50 202.6 99 99.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 3.6e-50 202.6 118 84.7
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 5.3e-46 188.7 250 45.6
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 8.0e-42 174.9 99 83.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 6.8e-41 171.8 158 62.7
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 8.8e-41 171.4 253 36.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.5e-40 170.6 99 80.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-39 166.0 99 76.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 8.3e-39 164.9 99 81.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.3e-31 141.0 128 60.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-17 94.7 101 49.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 8.9e-17 91.7 67 62.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 5.8e-16 89.0 137 45.3
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.4e-14 83.6 55 74.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.4e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.0e-12 78.2 56 67.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.8e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 1.5e-08 64.3 55 65.5


User provided reference genes

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