Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 2.3e-84 315.5 150 100.0
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 4.0e-65 251.5 150 80.7
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 2.6e-64 248.8 146 76.7
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 7.5e-64 247.3 150 78.0
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 9.9e-64 246.9 149 73.8
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 9.9e-64 246.9 140 78.6
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 9.9e-64 246.9 150 78.0
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 1.3e-63 246.5 150 78.0
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.2e-63 245.7 150 74.7
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.9e-63 245.4 150 76.0
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.9e-62 242.7 154 74.0
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 1.9e-62 242.7 150 75.3
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 1.9e-62 242.7 144 76.4
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 3.2e-62 241.9 137 78.8
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 3.2e-62 241.9 136 80.9
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 4.1e-62 241.5 139 79.1
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 4.1e-62 241.5 138 79.0
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 7.1e-62 240.7 140 77.1
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 7.1e-62 240.7 150 74.0
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 7.1e-62 240.7 138 79.7
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 9.2e-62 240.4 155 72.9
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.6e-61 239.6 137 78.1
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 1.6e-61 239.6 150 74.0
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 1.6e-61 239.6 138 78.3
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 2.7e-61 238.8 138 79.7
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 2.7e-61 238.8 147 73.5
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 3.5e-61 238.4 150 72.7
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 7.8e-61 237.3 138 79.0
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 1.0e-60 236.9 130 79.2
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 1.3e-60 236.5 150 72.7
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 1.3e-60 236.5 142 73.9
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 1.3e-60 236.5 141 76.6
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 2.3e-60 235.7 150 72.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 2.3e-60 235.7 150 72.7
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 3.0e-60 235.3 150 72.0
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 3.0e-60 235.3 134 78.4
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 3.9e-60 235.0 134 77.6
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 3.9e-60 235.0 134 77.6
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 3.9e-60 235.0 140 75.0
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 5.1e-60 234.6 141 76.6
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 5.1e-60 234.6 150 72.7
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 6.6e-60 234.2 147 72.1
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 8.6e-60 233.8 134 76.9
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 8.6e-60 233.8 138 77.5
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.1e-59 233.4 150 74.7
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 1.1e-59 233.4 140 75.0
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 1.5e-59 233.0 123 83.7
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 1.9e-59 232.6 134 76.9
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.5e-59 232.3 134 76.1
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 2.5e-59 232.3 150 72.7
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 3.3e-59 231.9 150 72.7
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 4.3e-59 231.5 140 75.7
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 4.3e-59 231.5 139 74.1
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.3e-59 231.5 139 74.1
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 5.6e-59 231.1 123 83.7
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 5.6e-59 231.1 150 71.3
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 7.3e-59 230.7 120 85.0
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 7.3e-59 230.7 134 75.4
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 7.3e-59 230.7 139 75.5
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 1.6e-58 229.6 150 71.3
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 2.1e-58 229.2 144 73.6
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.8e-58 228.8 138 76.8
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 4.7e-58 228.0 136 77.9
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 4.7e-58 228.0 137 73.7
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 8.1e-58 227.3 137 74.5
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 1.1e-57 226.9 133 75.9
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.4e-57 225.7 134 74.6
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 3.1e-57 225.3 149 70.5
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 4.0e-57 224.9 143 69.2
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 4.0e-57 224.9 125 79.2
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 4.0e-57 224.9 129 76.7
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 5.2e-57 224.6 137 73.7
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 6.8e-57 224.2 145 70.3
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 6.8e-57 224.2 184 59.8
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 4.4e-56 221.5 145 68.3
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 5.8e-56 221.1 167 62.3
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 7.6e-56 220.7 148 65.5
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 1.3e-55 219.9 145 70.3
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.3e-55 219.9 148 65.5
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 3.8e-55 218.4 145 68.3
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.8e-55 218.4 132 72.0
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.8e-55 218.4 146 65.8
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 6.4e-55 217.6 145 68.3
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 6.4e-55 217.6 145 68.3
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 8.4e-55 217.2 145 68.3
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 8.4e-55 217.2 143 67.8
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 2.4e-54 215.7 137 68.6
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 3.2e-54 215.3 152 68.4
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 5.4e-54 214.5 139 69.8
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 5.4e-54 214.5 140 68.6
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 1.2e-53 213.4 145 66.9
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.6e-53 213.0 145 67.6
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 2.1e-53 212.6 145 67.6
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 2.1e-53 212.6 125 76.8
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.5e-53 211.8 137 68.6
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 3.5e-53 211.8 142 69.0
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 4.6e-53 211.5 145 67.6
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 4.6e-53 211.5 136 72.1
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 7.8e-53 210.7 122 74.6
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 1.7e-52 209.5 201 52.2
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 6.6e-52 207.6 136 70.6
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 1.9e-51 206.1 146 66.4
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 3.3e-51 205.3 135 69.6
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 4.3e-51 204.9 157 63.1
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 8.1e-50 200.7 124 75.0
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 1.1e-49 200.3 132 68.2
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 4.9e-47 191.4 129 68.2
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 1.1e-46 190.3 134 62.7
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 2.4e-46 189.1 181 55.2
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 1.5e-43 179.9 95 86.3
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 4.3e-43 178.3 94 84.0
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.1e-42 176.0 108 75.0
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 6.2e-42 174.5 101 79.2
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 6.2e-42 174.5 95 82.1
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 2.1e-37 159.5 97 76.3
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.5e-35 153.3 95 72.6
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 6.9e-33 144.4 107 65.4
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 3.5e-21 105.5 114 50.9
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 6.9e-17 91.3 67 68.7
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-13 80.5 43 74.4
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.1e-09 67.4 35 91.4
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 1.4e-09 67.0 41 68.3
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 1.2e-08 63.9 38 65.8
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.9e-06 56.6 52 55.8
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 9.4e-06 54.3 33 78.8


User provided reference genes

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