Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 6.9e-84 313.9 157 100.0
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.1e-44 181.8 160 60.6
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.1e-44 181.8 160 60.6
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.0e-42 177.2 163 59.5
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.1e-40 167.9 163 56.4
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.0e-39 167.2 168 56.5
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 1.4e-39 166.8 164 57.3
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 1.8e-39 166.4 168 56.5
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 1.8e-39 166.4 169 55.0
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 6.7e-39 164.5 163 55.8
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 5.7e-38 161.4 167 52.7
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 9.7e-38 160.6 163 55.2
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 9.7e-38 160.6 167 52.7
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.7e-37 159.8 163 54.0
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.7e-37 159.8 163 55.8
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 2.2e-37 159.5 167 53.3
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 3.7e-37 158.7 164 50.6
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.7e-37 158.7 167 52.1
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 6.3e-37 157.9 165 53.9
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 1.8e-36 156.4 157 52.9
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 7.0e-36 154.5 163 50.9
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 7.0e-36 154.5 163 52.8
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 2.0e-35 152.9 168 53.0
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 2.6e-35 152.5 169 53.3
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 2.6e-35 152.5 168 51.8
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 2.6e-35 152.5 167 51.5
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 3.5e-35 152.1 165 51.5
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 3.5e-35 152.1 168 52.4
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 4.5e-35 151.8 164 51.8
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 5.9e-35 151.4 167 53.3
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 1.7e-34 149.8 169 50.9
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 2.2e-34 149.4 163 52.1
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 5.0e-34 148.3 158 51.3
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 5.0e-34 148.3 163 52.8
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 8.5e-34 147.5 168 49.4
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.1e-33 147.1 164 47.6
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 1.1e-33 147.1 169 49.1
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 3.2e-33 145.6 170 50.0
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 5.5e-33 144.8 163 47.9
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 9.4e-33 144.1 169 50.3
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 1.2e-32 143.7 165 50.9
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 1.6e-32 143.3 167 49.1
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.6e-32 143.3 166 50.6
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.6e-32 143.3 155 49.7
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.7e-32 142.5 168 51.8
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 4.7e-32 141.7 160 50.0
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 4.7e-32 141.7 166 53.0
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 6.1e-32 141.4 168 50.0
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 6.1e-32 141.4 159 48.4
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 8.0e-32 141.0 164 53.0
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 8.0e-32 141.0 167 48.5
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.0e-32 141.0 167 48.5
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 1.0e-31 140.6 158 51.9
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.0e-31 140.6 159 48.4
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.0e-31 140.6 165 50.9
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.4e-31 140.2 165 50.3
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.8e-31 139.8 171 46.2
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.0e-31 139.0 167 47.9
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.0e-31 139.0 159 47.8
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 6.7e-31 137.9 170 47.6
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 6.7e-31 137.9 170 48.2
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 6.7e-31 137.9 174 44.8
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 6.7e-31 137.9 175 48.6
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.2e-30 137.1 165 49.7
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.2e-30 137.1 162 48.8
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 2.0e-30 136.3 170 47.1
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.0e-30 136.3 163 48.5
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.6e-30 136.0 163 52.8
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.8e-29 132.5 167 44.3
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 4.8e-29 131.7 170 46.5
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 2.4e-28 129.4 157 51.6
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 9.1e-28 127.5 160 49.4
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 2.0e-27 126.3 180 43.9
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 3.5e-27 125.6 181 44.8
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 3.5e-27 125.6 165 48.5
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 5.9e-27 124.8 175 45.7
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 7.7e-27 124.4 172 44.2
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 7.7e-27 124.4 163 45.4
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 1.0e-26 124.0 162 45.1
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 5.0e-26 121.7 175 45.7
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 6.5e-26 121.3 165 44.8
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 8.5e-26 120.9 175 45.7
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.5e-25 119.4 164 49.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.1e-24 116.3 145 49.0
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.4e-23 113.6 170 42.4
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 3.0e-23 112.5 169 41.4
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 4.0e-23 112.1 167 41.3
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 2.6e-22 109.4 172 44.2
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 5.7e-22 108.2 162 43.8
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 7.5e-22 107.8 188 37.8
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 1.3e-21 107.1 158 41.8
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 1.7e-21 106.7 168 38.7
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 3.7e-21 105.5 154 46.1
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 3.7e-21 105.5 136 50.0
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 8.3e-21 104.4 167 37.7
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.1e-20 104.0 182 39.0
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 1.4e-20 103.6 170 38.8
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.4e-20 103.6 169 37.3
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 1.8e-20 103.2 160 41.9
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 3.1e-20 102.4 207 35.3
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 4.1e-20 102.1 192 37.0
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 5.4e-20 101.7 163 42.3
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 5.4e-20 101.7 203 35.5
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 7.0e-20 101.3 170 38.2
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 9.1e-20 100.9 207 35.3
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 9.1e-20 100.9 181 38.1
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 9.1e-20 100.9 181 38.1
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 9.1e-20 100.9 181 38.1
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 9.1e-20 100.9 181 38.1
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 1.2e-19 100.5 157 40.1
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 1.2e-19 100.5 182 37.4
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 3.5e-19 99.0 187 36.9
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 7.7e-19 97.8 140 44.3
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 2.9e-18 95.9 211 34.6
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 6.5e-18 94.7 180 35.6
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 2.5e-17 92.8 164 40.9
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 6.8e-15 84.7 162 36.4
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.6e-14 82.8 172 33.1
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.4e-14 82.0 160 31.9
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 7.5e-14 81.3 154 37.0
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 9.8e-14 80.9 159 31.4
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.3e-13 80.5 157 34.4
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 8.3e-13 77.8 163 35.0
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 1.8e-12 76.6 164 32.3
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 2.4e-12 76.3 163 36.8
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 5.4e-12 75.1 192 33.3
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 9.2e-12 74.3 152 33.6
HPP92_012322 Vanilla planifolia HOM05D005769 ORTHO05D006851 1.6e-11 73.6 154 37.0
HPP92_012395 Vanilla planifolia HOM05D005769 ORTHO05D006851 3.5e-11 72.4 154 35.7
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 4.5e-11 72.0 164 34.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.8e-11 71.2 154 30.5
Lalb_Chr10g0106921 Lupinus albus HOM05D005769 ORTHO05D006851 1.0e-10 70.9 118 38.1
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 7.3e-09 64.7 98 42.9
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 2.8e-08 62.8 72 44.4
SEGI_38354 Sequoiadendron giganteum HOM05D005769 ORTHO05D006851 7.5e-06 54.7 225 25.3


User provided reference genes

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