Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 2.1e-115 419.1 218 100.0
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 1.1e-71 273.9 221 67.9
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 6.0e-70 268.1 227 66.5
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 6.0e-70 268.1 223 67.3
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 1.0e-69 267.3 219 68.0
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.3e-69 266.2 219 68.9
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.3e-69 266.2 219 68.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 8.7e-69 264.2 221 67.4
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 7.3e-68 261.2 227 66.1
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 2.1e-67 259.6 217 66.8
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 2.1e-67 259.6 182 75.3
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 2.8e-67 259.2 217 67.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.8e-67 259.2 182 74.7
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.8e-67 259.2 182 74.7
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 6.9e-66 254.6 186 72.0
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 9.0e-66 254.2 187 71.1
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.4e-65 252.3 185 74.6
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 5.8e-65 251.5 218 66.5
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 7.6e-65 251.1 218 64.7
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 9.9e-65 250.8 192 71.4
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.3e-64 250.4 179 77.7
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 1.3e-64 250.4 199 69.3
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.7e-64 250.0 218 64.7
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 2.9e-64 249.2 182 76.9
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 4.9e-64 248.4 186 74.2
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 6.4e-64 248.1 218 64.2
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 1.9e-63 246.5 187 70.1
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 2.4e-63 246.1 181 75.7
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 2.4e-63 246.1 199 68.8
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.2e-63 245.7 201 69.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 4.2e-63 245.4 201 69.7
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.2e-63 245.4 201 69.7
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.4e-63 245.0 201 68.7
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 9.3e-63 244.2 206 67.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.6e-62 243.4 200 69.0
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 1.6e-62 243.4 204 68.6
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 4.6e-62 241.9 199 66.8
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 4.6e-62 241.9 215 64.7
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 6.0e-62 241.5 188 69.7
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 7.9e-62 241.1 201 68.2
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 7.9e-62 241.1 199 65.8
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.0e-61 240.7 200 69.0
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 1.3e-61 240.4 204 68.1
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 1.3e-61 240.4 204 68.1
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 1.3e-61 240.4 204 68.1
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.8e-61 240.0 183 73.2
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 2.3e-61 239.6 183 72.7
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 3.0e-61 239.2 183 72.7
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 3.9e-61 238.8 202 69.3
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 5.1e-61 238.4 208 64.4
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 5.1e-61 238.4 204 65.7
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 5.1e-61 238.4 182 71.4
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 6.7e-61 238.0 204 67.2
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 8.7e-61 237.7 204 68.6
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 8.7e-61 237.7 183 69.9
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 1.1e-60 237.3 204 68.6
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.5e-60 236.9 197 66.0
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.5e-60 236.9 153 82.4
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.5e-60 236.9 221 61.1
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.9e-60 236.5 165 77.0
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 2.5e-60 236.1 191 68.6
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 3.3e-60 235.7 182 71.4
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.3e-60 235.7 148 83.1
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 7.4e-60 234.6 203 66.5
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 9.6e-60 234.2 198 68.7
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 1.3e-59 233.8 203 66.5
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.6e-59 233.4 149 82.6
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 8.1e-59 231.1 223 60.5
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.1e-58 230.7 201 66.2
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 1.1e-58 230.7 182 70.9
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 1.1e-58 230.7 205 66.3
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 3.1e-58 229.2 197 66.5
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 3.4e-57 225.7 197 64.5
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 4.5e-57 225.3 199 63.8
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 9.9e-57 224.2 224 58.0
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 4.9e-56 221.9 202 62.4
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 8.4e-56 221.1 190 67.4
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 8.4e-56 221.1 215 62.3
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 3.2e-55 219.2 192 65.1
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 4.2e-55 218.8 211 61.6
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 5.5e-55 218.4 169 73.4
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 1.6e-54 216.9 220 60.9
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 8.7e-53 211.1 181 65.7
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 1.3e-51 207.2 176 67.6
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 2.1e-51 206.5 176 67.0
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 9.0e-50 201.1 170 67.1
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 4.5e-49 198.7 162 67.9
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.5e-47 193.0 127 81.1
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 1.5e-44 183.7 227 54.2
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 5.7e-44 181.8 150 64.0
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.8e-43 179.5 133 72.9
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 1.3e-40 170.6 119 74.8
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 5.0e-40 168.7 107 83.2
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 4.2e-39 165.6 108 75.9
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 7.2e-39 164.9 174 55.7
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 1.0e-37 161.0 198 50.0
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.1e-28 131.0 82 85.4
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 7.4e-28 128.3 82 84.1
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.9e-24 116.3 129 54.3
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.5e-23 113.2 74 79.7
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 5.5e-23 112.1 119 48.7
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.6e-22 110.5 104 60.6
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.8e-21 107.1 87 64.4
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.4e-18 96.7 103 57.3
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 6.5e-16 88.6 58 79.3
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 2.5e-15 86.7 112 41.1
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 2.4e-10 70.1 48 75.0
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 2.4e-10 70.1 111 40.5
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.1e-10 69.3 46 78.3
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 7.7e-09 65.1 102 36.3
Sc03g0008980 Simmondsia chinensis HOM05D007184 ORTHO05D008987 1.2e-06 57.8 43 65.1


User provided reference genes

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