Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 1.8e-108 396.0 204 100.0
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 2.4e-76 289.3 204 72.5
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 2.6e-75 285.8 203 69.5
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 2.6e-75 285.8 203 69.5
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 7.6e-75 284.3 206 71.8
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.3e-74 283.5 206 71.8
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 1.7e-74 283.1 203 70.0
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 3.8e-74 282.0 203 71.9
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.9e-73 279.6 203 70.0
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 7.1e-73 277.7 202 69.3
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 7.1e-73 277.7 202 69.3
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 9.3e-73 277.3 207 68.1
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 1.2e-72 276.9 203 70.0
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.6e-72 276.6 204 69.1
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 6.0e-72 274.6 206 69.9
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 1.0e-71 273.9 202 68.8
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 1.3e-71 273.5 205 69.3
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.3e-71 272.7 205 66.3
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 3.0e-71 272.3 204 68.1
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 5.1e-71 271.6 205 69.3
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 6.6e-71 271.2 204 68.1
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 6.6e-71 271.2 205 65.9
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 1.1e-70 270.4 209 65.6
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 3.3e-70 268.9 204 67.6
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 3.3e-70 268.9 203 67.5
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 3.3e-70 268.9 202 68.8
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 4.3e-70 268.5 205 63.9
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 4.3e-70 268.5 205 68.8
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 7.3e-70 267.7 205 67.8
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 7.3e-70 267.7 204 68.1
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 9.6e-70 267.3 203 68.5
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 1.6e-69 266.5 204 65.7
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.1e-69 266.2 204 66.2
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 2.1e-69 266.2 204 66.2
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.1e-69 266.2 204 66.7
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 2.8e-69 265.8 204 68.6
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 3.6e-69 265.4 204 65.7
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 4.8e-69 265.0 202 68.8
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.1e-68 263.8 204 65.2
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.4e-68 263.5 205 66.3
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 2.4e-68 262.7 204 66.7
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 2.4e-68 262.7 204 64.2
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 2.4e-68 262.7 206 68.0
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 3.1e-68 262.3 204 64.7
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 4.0e-68 261.9 204 68.1
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 5.3e-68 261.5 204 65.2
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 5.3e-68 261.5 204 64.2
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 5.3e-68 261.5 205 66.8
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 5.3e-68 261.5 205 66.8
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 6.9e-68 261.2 203 64.0
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 6.9e-68 261.2 206 65.5
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 6.9e-68 261.2 205 66.3
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 1.5e-67 260.0 206 62.6
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 2.6e-67 259.2 205 66.8
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 5.8e-67 258.1 204 65.7
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 1.1e-65 253.8 204 60.8
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 1.9e-65 253.1 210 63.8
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 7.1e-65 251.1 206 62.6
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 2.1e-64 249.6 205 62.4
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 6.6e-63 244.6 206 60.2
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 8.7e-63 244.2 206 60.2
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.5e-62 243.4 206 59.7
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 1.9e-62 243.0 205 61.0
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 5.6e-62 241.5 207 59.9
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 9.6e-62 240.7 207 63.3
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 2.8e-61 239.2 207 59.9
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 1.8e-60 236.5 207 61.8
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 2.4e-60 236.1 210 55.7
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 6.9e-60 234.6 210 55.2
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 3.8e-58 228.8 207 58.0
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 4.9e-58 228.4 208 59.6
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 8.4e-58 227.6 208 60.1
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.9e-57 226.5 210 56.7
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 5.5e-57 224.9 210 57.1
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 1.6e-56 223.4 204 59.8
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 3.5e-56 222.2 209 58.4
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.0e-55 220.7 207 57.5
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 2.3e-55 219.5 207 57.0
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 3.0e-55 219.2 209 58.9
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 3.0e-55 219.2 208 59.6
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 3.9e-55 218.8 208 59.1
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.9e-54 216.5 203 58.6
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 3.3e-54 215.7 209 57.9
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 3.3e-54 215.7 209 57.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 2.8e-53 212.6 208 58.7
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 4.8e-53 211.8 209 56.5
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 1.1e-52 210.7 145 71.0
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 1.8e-52 209.9 202 55.0
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 1.8e-47 193.4 202 49.5
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.8e-47 193.4 133 69.2
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.3e-45 187.2 120 75.0
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 5.7e-38 161.8 209 45.0
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 9.7e-38 161.0 204 46.6
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 5.3e-36 155.2 132 60.6
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 5.5e-33 145.2 200 37.0
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 7.2e-25 118.2 135 49.6
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 4.4e-22 109.0 141 41.1
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 4.4e-22 109.0 191 33.0
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 8.8e-15 84.7 90 50.0
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 7.0e-12 75.1 91 39.6
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 7.7e-11 71.6 149 30.2
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 1.3e-10 70.9 84 44.0
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.9e-09 67.0 119 38.7
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 5.5e-09 65.5 81 45.7
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 3.6e-08 62.8 180 27.2
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 1.2e-06 57.8 60 48.3


User provided reference genes

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