Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 6.5e-177 624.0 327 100.0
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 3.0e-81 306.2 341 55.4
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.1e-74 283.5 326 53.4
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 2.3e-73 280.0 332 52.4
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 9.6e-72 274.6 334 53.3
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 6.2e-71 271.9 342 51.5
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 6.2e-71 271.9 329 52.3
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 8.1e-71 271.6 335 49.9
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.5e-67 258.8 353 48.2
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.2e-61 241.1 337 47.5
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 1.3e-60 237.7 336 46.7
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 2.2e-60 236.9 337 46.6
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 4.2e-59 232.6 335 46.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 7.9e-58 228.4 336 42.6
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.3e-57 226.9 345 44.1
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 3.0e-57 226.5 332 46.1
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 3.9e-57 226.1 294 47.3
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 3.9e-57 226.1 337 45.1
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 6.7e-57 225.3 335 45.4
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.7e-57 224.9 346 44.5
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 3.3e-56 223.0 314 48.4
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 3.7e-55 219.5 338 45.9
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.8e-54 217.2 328 44.2
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.4e-54 216.9 346 43.1
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 3.1e-54 216.5 342 43.3
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 4.1e-54 216.1 328 43.9
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 8.5e-52 208.4 336 40.2
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.1e-51 208.0 342 43.6
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 2.5e-51 206.8 327 45.6
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 3.2e-51 206.5 323 43.7
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 5.5e-51 205.7 280 47.9
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 1.2e-50 204.5 342 42.4
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 1.6e-50 204.1 340 43.2
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 7.9e-50 201.8 327 44.3
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.0e-49 201.4 333 42.9
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 1.4e-49 201.1 344 43.0
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 1.4e-49 201.1 336 41.7
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.8e-49 200.7 342 45.3
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 2.3e-49 200.3 330 43.3
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.3e-49 200.3 369 41.5
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 3.0e-49 199.9 341 44.0
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.0e-48 197.2 478 34.7
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 2.5e-48 196.8 329 43.5
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 2.5e-48 196.8 341 40.5
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 5.7e-48 195.7 338 45.6
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 5.7e-48 195.7 351 43.0
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 7.4e-48 195.3 339 44.0
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 7.4e-48 195.3 342 44.4
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.7e-47 194.1 342 44.2
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 3.7e-47 193.0 335 43.0
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.8e-47 192.6 336 43.2
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.8e-47 192.6 336 43.8
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 4.1e-46 189.5 336 43.5
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 6.9e-46 188.7 326 43.6
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 9.1e-46 188.3 339 41.3
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 2.0e-45 187.2 328 41.2
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 7.7e-45 185.3 360 38.9
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 2.2e-44 183.7 331 39.3
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.8e-44 183.0 357 40.9
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 6.5e-44 182.2 333 41.1
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 1.9e-43 180.6 359 40.9
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 2.5e-43 180.3 218 49.5
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 4.2e-43 179.5 332 39.8
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 5.5e-43 179.1 336 39.3
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 5.5e-43 179.1 332 39.2
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 7.2e-43 178.7 334 37.4
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 1.6e-42 177.6 327 38.2
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 2.1e-42 177.2 347 40.1
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 2.7e-42 176.8 330 42.7
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 2.7e-42 176.8 348 38.8
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 4.7e-42 176.0 338 38.2
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 4.7e-42 176.0 350 38.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 6.1e-42 175.6 336 42.0
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 7.9e-42 175.3 328 39.9
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 1.0e-41 174.9 335 38.2
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 1.0e-41 174.9 336 39.6
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 1.0e-41 174.9 332 37.7
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 3.0e-41 173.3 334 38.3
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 3.0e-41 173.3 337 39.5
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 6.7e-41 172.2 336 37.5
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 8.8e-41 171.8 336 39.6
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.5e-40 171.0 329 41.9
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.5e-40 171.0 336 39.9
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 3.7e-39 166.4 338 36.7
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.4e-38 163.7 334 37.4
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 2.4e-38 163.7 334 37.4
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 2.4e-38 163.7 338 37.9
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.1e-38 163.3 332 39.2
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 3.1e-38 163.3 332 37.7
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 4.1e-38 162.9 340 38.5
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 7.0e-38 162.2 349 36.1
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 1.2e-37 161.4 336 38.7
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.0e-37 160.6 335 38.8
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 2.6e-37 160.2 344 37.8
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 3.5e-37 159.8 319 38.6
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 5.9e-37 159.1 333 37.5
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 1.3e-36 157.9 338 37.0
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.5e-35 154.5 280 42.9
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 1.9e-35 154.1 331 35.3
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 1.2e-34 151.4 339 36.3
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 6.1e-34 149.1 324 38.3
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 1.0e-33 148.3 328 36.0
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 1.0e-33 148.3 327 39.4
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 1.8e-33 147.5 332 36.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.3e-33 147.1 338 36.1
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 8.8e-33 145.2 335 36.4
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 1.1e-32 144.8 334 36.5
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.0e-32 144.1 331 36.3
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 2.0e-32 144.1 264 40.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 7.4e-32 142.1 339 35.4
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.3e-31 141.4 331 36.9
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.3e-31 141.4 282 40.1
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 3.7e-31 139.8 348 34.5
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 1.4e-30 137.9 348 36.2
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 9.1e-30 135.2 331 35.6
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 3.5e-29 133.3 333 33.0
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 5.9e-29 132.5 332 37.3
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 5.9e-29 132.5 335 35.2
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 7.7e-29 132.1 327 32.4
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 1.7e-28 131.0 129 53.5
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 2.2e-28 130.6 331 37.2
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 1.9e-27 127.5 326 33.7
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 3.2e-27 126.7 331 35.3
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 4.2e-27 126.3 328 35.7
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 5.5e-27 125.9 348 33.9
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 5.5e-27 125.9 238 40.3
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 2.7e-26 123.6 331 35.0
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 4.7e-26 122.9 332 31.9
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 1.0e-25 121.7 326 32.8
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 4.0e-25 119.8 336 33.9
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 1.5e-24 117.9 221 39.4
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 1.3e-23 114.8 346 33.2
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 1.7e-23 114.4 234 38.0
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 2.2e-23 114.0 349 33.2
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 2.2e-23 114.0 113 55.8
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 3.7e-23 113.2 326 32.5
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 6.3e-23 112.5 326 34.4
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 8.3e-23 112.1 337 31.8
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 7.0e-22 109.0 381 33.6
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 3.5e-21 106.7 169 40.8
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 4.5e-21 106.3 338 29.6
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 7.7e-21 105.5 383 33.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 1.3e-20 104.8 190 44.7
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 1.7e-20 104.4 191 41.4
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.9e-20 103.6 121 50.4
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 5.0e-20 102.8 339 29.8
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 8.5e-20 102.1 257 30.7
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.5e-19 99.4 279 35.8
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 2.1e-18 97.4 212 38.2
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 2.1e-18 97.4 204 37.7
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 2.2e-15 87.4 325 28.0
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 2.8e-15 87.0 356 28.4
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 6.3e-15 85.9 155 38.7
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 8.3e-15 85.5 347 28.5
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-14 84.7 305 28.2
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.4e-14 84.0 208 37.0
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 4.1e-14 83.2 268 29.5
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.2e-13 81.6 275 28.7
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.6e-13 81.3 134 41.0
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.7e-13 80.5 359 26.5
CAN.G777.9 Capsicum annuum HOM05D003841 ORTHO05D004602 3.8e-12 76.6 159 38.4
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 5.0e-12 76.3 247 30.8
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 6.6e-12 75.9 182 34.1
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.5e-11 74.7 124 46.0
CAN.G935.4 Capsicum annuum HOM05D003841 ORTHO05D004602 1.6e-10 71.2 97 41.2
CAN.G1207.10 Capsicum annuum HOM05D003841 ORTHO05D004602 1.4e-09 68.2 59 57.6
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 3.0e-09 67.0 377 27.6
Phvul.005G089400 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 8.9e-09 65.5 75 49.3
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 4.4e-08 63.2 225 26.2
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 9.8e-08 62.0 323 27.2
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 1.3e-07 61.6 324 28.4
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.3e-07 61.6 357 24.4
VMungo1080G1564 Vigna mungo HOM05D003841 ORTHO05D004602 2.9e-07 60.5 107 42.1
SMO367G1113 Selaginella moellendorffii HOM05D002766 ORTHO05D002809 4.9e-07 59.7 307 26.7
SEGI_39337 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 4.1e-06 56.6 279 24.0
Prupe.5G070000 Prunus persica HOM05D003841 ORTHO05D004602 5.4e-06 56.2 161 34.2
Pp3c17_23830 Physcomitrium patens HOM05D039964 ORTHO05D002809 7.0e-06 55.8 388 22.4


User provided reference genes

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