Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 5.0e-105 384.4 191 100.0
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 3.4e-69 265.4 176 73.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 7.6e-69 264.2 176 72.7
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.9e-68 262.3 176 72.7
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 8.4e-68 260.8 176 73.9
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-67 260.4 176 72.7
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.1e-67 260.4 176 72.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-67 260.4 176 73.3
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.4e-67 260.0 176 71.6
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 2.4e-67 259.2 176 72.2
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 4.2e-67 258.5 176 72.2
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 9.3e-67 257.3 177 71.8
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 9.3e-67 257.3 173 72.8
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.2e-66 256.9 176 72.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-66 256.5 176 72.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-66 256.5 176 72.2
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 2.1e-66 256.1 186 68.3
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.7e-66 255.8 176 72.7
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 3.5e-66 255.4 171 73.7
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 1.3e-65 253.4 184 69.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.3e-65 253.4 176 70.5
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 2.3e-65 252.7 176 69.9
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.9e-65 251.9 176 69.3
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.7e-65 250.8 176 71.0
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 8.7e-65 250.8 176 71.0
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 1.1e-64 250.4 188 68.1
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.1e-64 250.4 171 71.9
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 1.5e-64 250.0 176 70.5
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 1.9e-64 249.6 170 73.5
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 2.5e-64 249.2 164 75.0
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 3.3e-64 248.8 188 66.5
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 7.4e-64 247.7 177 70.6
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 2.8e-63 245.7 176 69.9
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 4.8e-63 245.0 170 71.8
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 6.2e-63 244.6 171 71.3
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 5.3e-62 241.5 176 68.2
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 9.0e-62 240.7 172 68.6
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 5.8e-61 238.0 178 66.3
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 9.9e-61 237.3 166 69.3
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.7e-60 236.5 178 66.3
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 2.9e-60 235.7 174 65.5
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.8e-60 235.3 178 66.3
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 6.4e-60 234.6 178 65.7
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.4e-59 233.4 187 60.4
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 1.9e-59 233.0 155 72.3
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 4.2e-59 231.9 188 63.3
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 2.1e-58 229.6 158 70.9
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 7.9e-58 227.6 177 65.0
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.0e-57 227.3 175 64.0
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 3.0e-57 225.7 166 68.7
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 3.0e-57 225.7 160 70.6
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 3.9e-57 225.3 171 64.9
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 8.7e-57 224.2 167 66.5
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 1.9e-56 223.0 184 60.9
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.5e-56 222.6 175 63.4
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 3.3e-56 222.2 172 64.0
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.6e-55 219.9 156 70.5
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 2.1e-55 219.5 179 58.7
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 2.1e-55 219.5 179 58.7
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 3.7e-55 218.8 174 60.3
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 4.8e-55 218.4 162 67.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 6.2e-55 218.0 179 58.1
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 8.1e-55 217.6 176 59.7
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 8.1e-55 217.6 179 59.2
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.1e-54 217.2 151 70.9
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.8e-54 216.5 172 61.6
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 2.4e-54 216.1 177 58.2
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 2.4e-54 216.1 178 59.0
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 2.4e-54 216.1 170 62.4
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 6.9e-54 214.5 176 58.5
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 6.9e-54 214.5 180 59.4
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 3.4e-53 212.2 141 72.3
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 4.5e-53 211.8 172 59.3
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 7.6e-53 211.1 176 60.2
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.7e-52 209.9 174 58.6
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.2e-52 209.5 171 61.4
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 2.9e-52 209.1 172 58.7
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 3.8e-52 208.8 167 59.3
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 8.4e-52 207.6 178 58.4
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.1e-51 207.2 173 57.8
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.9e-51 206.5 151 66.2
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 2.5e-51 206.1 172 59.9
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 3.5e-50 202.2 168 60.1
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.0e-49 200.7 156 62.8
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.0e-49 200.7 171 60.2
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 3.9e-49 198.7 177 55.4
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 2.4e-46 189.5 186 55.9
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 5.3e-46 188.3 185 55.7
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 6.5e-44 181.4 127 70.9
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 1.9e-43 179.9 132 68.9
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 9.3e-43 177.6 190 50.5
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 2.7e-42 176.0 132 65.9
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 8.7e-41 171.0 176 52.3
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 8.7e-41 171.0 134 64.2
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 1.2e-37 160.6 123 63.4
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 4.5e-37 158.7 127 59.8
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 7.7e-37 157.9 127 61.4
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.7e-36 156.8 127 60.6
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 2.9e-36 156.0 195 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 3.8e-36 155.6 177 45.8
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.4e-33 147.1 98 70.4
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.1e-32 144.1 103 71.8
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.7e-31 140.2 169 45.6
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.1e-26 123.2 148 47.3
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 4.7e-26 122.1 172 41.3
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 6.1e-26 121.7 141 46.8
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 1.3e-20 104.0 172 36.0
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 1.5e-19 100.5 177 37.3
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 7.2e-19 98.2 153 38.6
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.2e-16 90.9 144 39.6
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 3.3e-16 89.4 110 46.4
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 2.8e-15 86.3 132 38.6
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 2.0e-13 80.1 134 34.3
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 4.7e-10 68.9 48 64.6
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 9.8e-08 61.2 41 65.9


User provided reference genes

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