Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 2.6e-35 151.4 69 100.0
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 3.9e-31 137.5 69 85.5
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 5.1e-31 137.1 69 85.5
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 5.1e-31 137.1 69 85.5
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 8.6e-31 136.3 69 85.5
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.5e-30 135.6 69 84.1
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 3.3e-30 134.4 69 84.1
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 4.3e-30 134.0 69 84.1
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 5.6e-30 133.7 69 84.1
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 5.6e-30 133.7 69 82.6
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 2.8e-29 131.3 69 79.7
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 3.6e-29 131.0 69 84.1
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.7e-29 130.6 67 82.1
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.7e-29 130.6 67 82.1
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 4.7e-29 130.6 69 79.7
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 4.7e-29 130.6 69 81.2
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 4.7e-29 130.6 69 81.2
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 6.2e-29 130.2 67 80.6
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 8.1e-29 129.8 69 81.2
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 76.8
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 76.8
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 76.8
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 1.1e-28 129.4 69 76.8
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 1.4e-28 129.0 69 76.8
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 1.4e-28 129.0 69 76.8
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 1.4e-28 129.0 69 82.6
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 1.4e-28 129.0 69 81.2
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.4e-28 129.0 67 86.6
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 2.3e-28 128.3 69 79.7
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 2.3e-28 128.3 67 80.6
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 3.1e-28 127.9 69 81.2
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 3.1e-28 127.9 69 76.8
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 4.0e-28 127.5 69 78.3
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 4.0e-28 127.5 69 79.7
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 5.2e-28 127.1 69 81.2
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 79.7
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 6.8e-28 126.7 69 82.6
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 75.4
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 82.6
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 79.7
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 79.7
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 8.9e-28 126.3 69 79.7
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.2e-27 125.9 69 73.9
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.2e-27 125.9 69 82.6
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.5e-27 125.6 69 75.4
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.0e-27 125.2 67 79.1
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 75.4
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 78.3
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 78.3
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 79.7
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 2.0e-27 125.2 69 75.4
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 2.6e-27 124.8 69 73.9
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 2.6e-27 124.8 69 76.8
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.6e-27 124.8 69 75.4
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.4e-27 124.4 69 78.3
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.4e-27 124.4 69 76.8
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.4e-27 124.4 69 76.8
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 3.4e-27 124.4 69 78.3
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 4.4e-27 124.0 69 76.8
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 4.4e-27 124.0 69 75.4
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 79.7
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 75.4
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 75.4
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 79.7
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 5.8e-27 123.6 69 73.9
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 7.6e-27 123.2 69 73.9
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 7.6e-27 123.2 68 77.9
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 73.9
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 76.8
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 9.9e-27 122.9 69 73.9
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.3e-26 122.5 69 73.9
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 1.3e-26 122.5 68 73.5
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.3e-26 122.5 68 75.0
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 1.3e-26 122.5 69 78.3
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.3e-26 122.5 68 79.4
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.7e-26 122.1 67 79.1
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 1.7e-26 122.1 68 75.0
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.7e-26 122.1 69 75.4
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 2.2e-26 121.7 67 76.1
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 73.9
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 2.9e-26 121.3 67 73.1
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 72.5
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 2.9e-26 121.3 69 72.5
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.8e-26 120.9 69 75.4
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 75.4
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 72.5
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 76.8
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 4.9e-26 120.6 69 73.9
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 4.9e-26 120.6 67 79.1
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 76.8
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 75.4
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 6.4e-26 120.2 69 72.5
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 6.4e-26 120.2 68 73.5
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 72.5
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 78.3
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 76.8
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 1.1e-25 119.4 69 76.8
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 1.4e-25 119.0 69 78.3
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 1.4e-25 119.0 69 76.8
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 1.4e-25 119.0 67 73.1
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.4e-25 119.0 67 71.6
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.9e-25 118.6 67 74.6
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.9e-25 118.6 69 73.9
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 73.9
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 71.0
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 71.0
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 2.4e-25 118.2 69 78.3
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 2.4e-25 118.2 67 73.1
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 3.2e-25 117.9 69 78.3
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 72.5
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 72.5
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 4.1e-25 117.5 69 72.5
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 5.4e-25 117.1 69 73.9
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 74.6
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 5.4e-25 117.1 69 76.8
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 77.6
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 9.2e-25 116.3 67 76.1
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 73.9
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 73.9
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 73.9
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 9.2e-25 116.3 69 73.9
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 75.4
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 72.5
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.2e-24 115.9 69 73.9
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 76.8
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.6e-24 115.5 69 69.6
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 73.9
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 72.5
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 2.7e-24 114.8 67 74.6
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 2.7e-24 114.8 69 71.0
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 3.5e-24 114.4 67 73.1
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 4.6e-24 114.0 69 72.5
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 75.4
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 6.0e-24 113.6 69 72.5
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 76.1
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 70.1
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 69 71.0
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 72.5
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.3e-23 112.5 69 72.5
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.3e-23 111.7 69 72.5
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 70.1
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 3.0e-23 111.3 69 71.0
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.1e-22 109.4 61 70.5
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.1e-22 109.4 69 72.5
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 71.0
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 71.0
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 71.0
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 2.5e-22 108.2 69 71.0
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 4.3e-22 107.5 69 71.0
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 5.6e-22 107.1 69 71.0
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 7.3e-22 106.7 69 71.0
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 9.6e-22 106.3 67 68.7
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 9.6e-22 106.3 67 67.2
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.4e-20 102.4 69 66.7
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 2.4e-20 101.7 70 67.1
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.1e-20 101.3 67 70.1
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 4.0e-20 100.9 66 71.2
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 6.9e-20 100.1 62 72.6
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.2e-19 99.4 56 75.0
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 4.4e-19 97.4 69 66.7
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 9.9e-19 96.3 56 71.4
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 2.9e-18 94.7 60 71.7
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 3.8e-18 94.4 69 63.8
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 7.1e-17 90.1 57 68.4
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 1.3e-15 85.9 48 79.2
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 3.9e-15 84.3 50 72.0
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 3.3e-14 81.3 44 81.8
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 1.4e-12 75.9 46 78.3
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 4.0e-12 74.3 41 80.5
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 9.0e-12 73.2 64 46.9
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 2.2e-10 68.6 39 74.4
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.6e-08 62.4 41 68.3
Pp3c3_2380 Physcomitrium patens HOM05D003865 ORTHO05D004466 3.0e-07 58.2 67 38.8
Mapoly0085s0012 Marchantia polymorpha HOM05D003865 ORTHO05D004466 4.3e-06 54.3 58 43.1
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 9.6e-06 53.1 63 30.2


User provided reference genes

Program Settings