Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.6e-169 599.4 300 100.0
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.9e-139 498.0 300 83.0
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.9e-138 496.1 300 82.7
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 4.6e-137 491.5 300 82.3
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 9.6e-135 483.8 301 81.4
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 6.2e-134 481.1 302 81.5
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.1e-133 480.3 304 81.9
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 5.8e-132 474.6 300 79.0
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 5.8e-132 474.6 300 79.0
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.3e-131 473.4 300 79.0
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 2.9e-131 472.2 300 79.0
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.4e-131 470.7 301 79.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 7.9e-129 464.2 300 78.7
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 4.3e-127 458.4 300 77.7
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.3e-126 456.8 301 77.7
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-126 456.4 300 76.3
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.6e-126 456.4 300 77.7
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.8e-126 455.7 298 79.2
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.6e-126 455.3 301 77.1
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 8.1e-126 454.1 300 76.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.6e-124 449.1 300 75.3
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.5e-124 448.4 296 76.7
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.8e-123 445.3 296 77.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.4e-122 443.4 301 75.1
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.9e-122 443.0 302 76.2
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.2e-121 440.3 302 75.8
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.1e-121 439.5 296 75.0
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 7.9e-121 437.6 282 79.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.3e-120 436.0 288 77.1
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 3.0e-120 435.6 299 74.6
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.1e-119 433.7 295 75.6
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.5e-119 433.3 300 72.7
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.9e-119 433.0 296 74.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.9e-119 433.0 300 71.0
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 2.1e-118 429.5 298 73.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.9e-117 424.5 296 75.0
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 6.9e-117 424.5 296 75.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 9.0e-117 424.1 300 74.0
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.5e-116 423.3 302 72.5
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.3e-115 420.2 296 74.3
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.7e-115 419.9 296 73.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 3.8e-115 418.7 294 73.5
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 4.9e-115 418.3 296 73.6
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 6.5e-115 417.9 296 74.3
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.1e-114 417.2 289 74.7
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.4e-114 416.8 295 71.9
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.9e-114 416.4 294 73.1
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.9e-114 416.4 291 72.2
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 4.2e-114 415.2 298 72.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.6e-113 413.3 297 74.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-113 412.9 296 72.6
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.9e-113 411.0 302 71.2
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.0e-112 410.6 296 72.6
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-112 410.6 296 72.3
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.8e-112 409.8 294 72.4
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.3e-112 409.5 295 72.2
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.3e-112 409.5 296 73.0
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.3e-112 409.5 284 73.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.9e-112 408.7 297 72.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.9e-112 408.7 296 72.0
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.1e-112 408.3 297 72.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 8.7e-112 407.5 297 71.7
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 8.7e-112 407.5 296 73.0
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 8.7e-112 407.5 300 70.7
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.5e-111 406.8 297 73.4
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.5e-111 406.8 296 72.0
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.5e-111 406.8 296 72.3
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.9e-111 406.4 298 70.1
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.3e-111 405.6 296 72.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.3e-111 405.6 296 70.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 5.7e-111 404.8 296 72.6
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 5.7e-111 404.8 297 71.4
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 5.7e-111 404.8 297 71.4
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 5.7e-111 404.8 296 72.6
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.7e-111 404.8 297 73.4
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 7.4e-111 404.4 298 70.1
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 9.6e-111 404.1 296 72.6
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 9.6e-111 404.1 297 71.4
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 9.6e-111 404.1 297 70.7
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 9.6e-111 404.1 297 73.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 9.6e-111 404.1 300 70.7
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.3e-110 403.7 295 71.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.6e-110 403.3 298 71.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.6e-110 403.3 296 72.6
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-110 402.9 296 72.3
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 2.1e-110 402.9 296 72.3
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 2.1e-110 402.9 296 72.3
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 2.1e-110 402.9 298 70.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 2.8e-110 402.5 289 70.9
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 3.7e-110 402.1 297 72.7
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 3.7e-110 402.1 296 72.6
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.7e-110 402.1 297 70.4
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 4.8e-110 401.7 298 72.5
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.3e-110 401.4 297 72.4
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 6.3e-110 401.4 291 72.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.1e-109 400.6 295 71.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.1e-109 400.6 295 71.2
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 3.1e-109 399.1 298 70.8
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 4.1e-109 398.7 301 69.8
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.3e-109 398.3 295 70.8
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 5.3e-109 398.3 300 69.7
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.9e-109 397.9 298 68.1
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.5e-108 396.7 297 70.4
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.6e-108 396.0 304 70.1
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.4e-108 395.6 295 70.5
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 3.4e-108 395.6 302 68.9
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.5e-108 395.2 300 68.7
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 7.6e-108 394.4 285 71.9
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.0e-107 394.0 297 69.4
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.7e-107 393.3 294 70.4
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.8e-107 392.1 290 72.4
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-107 392.1 298 69.5
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-107 392.1 298 69.5
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 5.0e-107 391.7 290 72.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 5.0e-107 391.7 298 69.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.1e-106 390.6 296 69.6
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.1e-106 390.6 289 70.2
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.1e-106 390.6 298 70.1
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.1e-106 390.6 298 70.1
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-106 390.6 298 70.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.4e-106 390.2 298 69.5
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 4.2e-106 388.7 296 67.6
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 7.2e-106 387.9 301 71.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 9.3e-106 387.5 290 72.1
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 3.5e-105 385.6 300 69.0
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 3.5e-105 385.6 300 67.0
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 4.6e-105 385.2 300 69.0
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.9e-105 384.4 296 69.3
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.0e-104 384.0 298 69.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.0e-100 369.8 291 69.4
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.7e-99 366.7 302 68.5
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 8.5e-99 364.4 312 62.5
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.5e-98 362.8 300 65.7
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 3.2e-98 362.5 289 65.1
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 6.1e-97 358.2 299 65.2
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.1e-96 355.1 311 60.8
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 5.1e-96 355.1 299 64.9
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.5e-95 352.8 311 61.1
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.3e-94 350.5 250 71.2
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.2e-92 344.0 315 58.4
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.2e-92 344.0 300 63.0
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-87 325.9 268 63.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.3e-86 323.9 298 61.4
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 4.1e-85 318.9 297 58.9
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.1e-77 292.7 286 55.6
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.5e-74 283.9 199 74.9
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.4e-72 277.3 220 68.2
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-67 261.2 285 51.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 5.0e-67 258.8 285 51.2
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.4e-66 254.6 281 52.3
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.6e-57 227.3 144 79.2
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 2.8e-57 226.5 285 46.3
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 8.0e-57 224.9 171 69.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.5e-55 220.7 149 73.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.9e-54 215.7 273 48.0
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-51 207.2 131 77.1
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.3e-43 180.3 157 61.8
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.3e-26 123.2 103 61.2
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 7.3e-26 122.1 332 28.3
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 8.9e-24 115.2 89 70.8
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 5.8e-23 112.5 109 56.9
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 2.4e-21 107.1 109 56.0
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.5e-18 97.1 98 57.1
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 2.1e-12 77.4 71 54.9
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 9.6e-10 68.6 85 51.8
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 6.4e-06 55.8 72 48.6
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 8.4e-06 55.5 68 45.6


User provided reference genes

Program Settings