Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 1.6e-52 209.1 105 100.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 1.8e-11 72.8 43 76.7
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 3.4e-10 68.6 43 74.4
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 3.4e-10 68.6 43 72.1
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 2.2e-09 65.9 42 73.8
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 2.8e-09 65.5 43 69.8
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 3.7e-09 65.1 43 69.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 3.7e-09 65.1 43 74.4
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 6.3e-09 64.3 35 82.9
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.1e-08 63.5 63 60.3
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 1.4e-08 63.2 69 49.3
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.4e-08 63.2 40 77.5
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.4e-08 63.2 49 67.3
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.8e-08 62.8 43 67.4
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 3.1e-08 62.0 40 75.0
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 5.4e-08 61.2 40 75.0
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 5.4e-08 61.2 43 62.8
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 7.0e-08 60.8 43 65.1
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 7.0e-08 60.8 43 65.1
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 1.2e-07 60.1 52 63.5
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 1.6e-07 59.7 40 75.0
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 2.0e-07 59.3 100 36.0
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 2.7e-07 58.9 37 70.3
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 3.5e-07 58.5 40 67.5
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 3.5e-07 58.5 34 79.4
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 4.5e-07 58.2 43 60.5
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 4.5e-07 58.2 43 62.8
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 5.9e-07 57.8 44 65.9
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 5.9e-07 57.8 42 66.7
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 7.7e-07 57.4 39 66.7
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 7.7e-07 57.4 43 62.8
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 1.0e-06 57.0 47 61.7
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 1.0e-06 57.0 42 66.7
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 1.3e-06 56.6 43 69.8
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 61.4
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.7e-06 56.2 33 78.8
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 1.7e-06 56.2 40 72.5
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 1.7e-06 56.2 44 63.6
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 1.7e-06 56.2 40 72.5
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 2.3e-06 55.8 33 75.8
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 2.3e-06 55.8 33 75.8
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 2.3e-06 55.8 33 75.8
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.3e-06 55.8 39 69.2
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 2.3e-06 55.8 43 62.8
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 2.9e-06 55.5 41 68.3
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.9e-06 55.5 39 69.2
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 3.8e-06 55.1 39 64.1
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 3.8e-06 55.1 39 64.1
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 3.8e-06 55.1 45 64.4
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 3.8e-06 55.1 45 64.4
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.8e-06 55.1 41 70.7
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.8e-06 55.1 41 70.7
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 3.8e-06 55.1 41 70.7
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 5.0e-06 54.7 42 57.1
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 6.6e-06 54.3 40 70.0


User provided reference genes

Program Settings